PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.007G097100.1

Common Name

POPTR_0007s05010g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HD-ZIP

Protein Properties

Length: 329aa MW: 36845.6 Da PI: 4.583

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.007G097100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4e-19	60	113	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Potri.007G097100.1 60 KKRRLSGDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 566899***********************************************9 PP
2	HD-ZIP_I/II	131.5	3.3e-42	59	151	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk++ ++L++++e+L +e+ Potri.007G097100.1 59 EKKRRLSGDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKHNFDALQHDNEALLKEI 149 69*************************************************************************************9999 PP HD-ZIP_I/II 92 ke 93 +e Potri.007G097100.1 150 RE 151 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-19	47	117	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.491	55	115	IPR001356	Homeobox domain
SMART	SM00389	7.4E-18	58	119	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-16	60	113	IPR001356	Homeobox domain
CDD	cd00086	1.25E-16	60	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-20	62	122	IPR009057	Homeodomain-like
PRINTS	PR00031	9.5E-6	86	95	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	90	113	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.5E-6	95	111	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.6E-19	115	156	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MKRSLGSSDS LGALMSICPS AEEHSPRNHT HVYSREFQSM LDGLDEEGCV EEAGGHVTEK 60 KRRLSGDQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ VAVWFQNRRA RWKTKQLERD 120 YGVLKANYDS LKHNFDALQH DNEALLKEIR ELKAKLNEEN AESNVSVKEE IILAESEDKM 180 PEEDTPALLD SVAASETKEL NYETFNNHSS INIGLGASLF PDFKDGSSDS DSSAILNEDN 240 SPNPAISSSG ILQSQLMMSP PPSSSLRFNC SASSSSPSSM NCFQFSKSYQ TQFVKLEEHN 300 FFSSEEACNF FSDEQPPSLP WYSSDQWN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	115	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.9592	0.0	bud\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.007G097100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147945	0.0	EF147945.1 Populus trichocarpa clone WS0126_C14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006380403.1	0.0	homeobox-leucine zipper protein ATHB-6
Swissprot	P46668	2e-81	ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBL	A9PHT9	0.0	A9PHT9_POPTR; HD-ZIP family protein
STRING	POPTR_0007s05010.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1868	34	89
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	4e-82	homeobox protein 6

Link Out ? help Back to Top
Phytozome	Potri.007G097100.1
Entrez Gene	18100934

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]