PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G042500.2
Common NamePOPTR_0007s11170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 476aa    MW: 53668.3 Da    PI: 8.8631
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G042500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.5e-20107197199
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+k l++s+v +  ++ lp +f+++h  ++   + t+tl+de g+++++k+i  k++    l++GW++F+ a++L egD++vF+l+++ +f
  Potri.007G042500.2 107 FVKSLVRSHVASCFWMGLPGQFCRAHlPHV---DATVTLQDECGKEFKMKYIAYKTG----LSAGWRQFCVAHRLFEGDVLVFQLIESCTF 190
                         89************************5333...569***************666665....9************************98888 PP

                         ..EEEEE-S CS
                  B3  91 elvvkvfrk 99 
                           +v v+r+
  Potri.007G042500.2 191 --KVYVIRA 197
                         ..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-21100198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-25101198IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-26105196No hitNo description
PROSITE profilePS5086313.028107198IPR003340B3 DNA binding domain
SMARTSM010193.8E-23107198IPR003340B3 DNA binding domain
PfamPF023629.2E-18107197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSGRVKKEVE ETDLIKQQPF HEENRKYVED GDGKQKSPME TTAKRLKIKR RYSDSKLKFV  60
ISGQAGKCIW QNRAPVERSN TVGETRSSAL IRAEEVQSNL EPAFPSFVKS LVRSHVASCF  120
WMGLPGQFCR AHLPHVDATV TLQDECGKEF KMKYIAYKTG LSAGWRQFCV AHRLFEGDVL  180
VFQLIESCTF KVYVIRANDL TEVDGALGLL NLDAQIKQNI ADNAERGNTA SKSSKRKRPR  240
SLPLAIVQKK NKKSGQPRPS VLQAGQPAEQ SENDSEEVGS EVLEGFKLSL PAVQFKDIKS  300
FEDFNILVDG LLLDSELSED IRNKYYKLCC SQNAFLHDNL IKGVNLKLIA GIISETVNIA  360
DAMRACTLNT SRDEFATWDK ALKASELFGM NVGFLRSKLG LLLSLAFDSE GATKTRRYIE  420
ARFKRVRTED EIRNLEAKLV ELKETYERYG ADVERLKSKA EGYELKFQEQ VLAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G042500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380709.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLU5G8B00.0U5G8B0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11170.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-37B3 family protein