PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G039400.3 | ||||||||
Common Name | POPTR_0007s11470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 245aa MW: 27888.5 Da PI: 6.7328 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.9 | 1.7e-11 | 219 | 242 | 1 | 24 |
G2-like 1 kprlrWtpeLHerFveaveqLGGs 24 k+r++W+peLH+rFv+a++qLGG Potri.007G039400.3 219 KQRRCWSPELHRRFVDALQQLGGC 242 79*********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 218 | 243 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MELSLDLSLV CEPKTINECL KEVSMVKDGS QKLTKLYDYV ERLEDERRKI DAFKRELPLC 60 MLLLNEAIAR LKEEAMQCSE LNDLIPLKGN SNEDGNDKKN WMSSVQLWNT NNHLDCKKQD 120 SKSEPKQKSE EDDDRSTCEN PVQLGDHSNK GEAFVPFKAL SGFEGSKRKE EKEVVSQVTG 180 LSPMTPVPDL SSCNWTRKSN NCSNQTKILS KSQQQAYRKQ RRCWSPELHR RFVDALQQLG 240 GCQG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.3535 | 0.0 | bud |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00629 | PBM | Transfer from PK14402.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G039400.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216599 | 0.0 | AC216599.1 Populus trichocarpa clone POP051-K05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310743.1 | 1e-180 | transcription factor HHO5 | ||||
TrEMBL | B9HE75 | 1e-178 | B9HE75_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11470.1 | 1e-179 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 3e-46 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G039400.3 |
Entrez Gene | 7483133 |