PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G039400.1 | ||||||||
Common Name | POPTR_0007s11470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 352aa MW: 39293.9 Da PI: 6.8328 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.2 | 1.6e-32 | 219 | 274 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG ++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ Potri.007G039400.1 219 KQRRCWSPELHRRFVDALQQLGGCQVATPKQIREHMQVDGLTNDEVKSHLQKYRLH 274 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.93 | 216 | 276 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-18 | 217 | 277 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-29 | 218 | 277 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-26 | 219 | 274 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.5E-9 | 221 | 272 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MELSLDLSLV CEPKTINECL KEVSMVKDGS QKLTKLYDYV ERLEDERRKI DAFKRELPLC 60 MLLLNEAIAR LKEEAMQCSE LNDLIPLKGN SNEDGNDKKN WMSSVQLWNT NNHLDCKKQD 120 SKSEPKQKSE EDDDRSTCEN PVQLGDHSNK GEAFVPFKAL SGFEGSKRKE EKEVVSQVTG 180 LSPMTPVPDL SSCNWTRKSN NCSNQTKILS KSQQQAYRKQ RRCWSPELHR RFVDALQQLG 240 GCQVATPKQI REHMQVDGLT NDEVKSHLQK YRLHLRKVPA SPAAPASQDQ CKDPSTGNIS 300 QSNSPKGSLH ASGSAKATSN TGGDSMEAED DDKSESHSWN GALHKPGEAH V* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.3535 | 0.0 | bud |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00629 | PBM | Transfer from PK14402.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G039400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216599 | 0.0 | AC216599.1 Populus trichocarpa clone POP051-K05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310743.1 | 0.0 | transcription factor HHO5 | ||||
TrEMBL | B9HE75 | 0.0 | B9HE75_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11470.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 | Representative plant | OGRP2563 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 1e-68 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G039400.1 |
Entrez Gene | 7483133 |