PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G035500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 313aa    MW: 35076.3 Da    PI: 9.3703
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G035500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.5e-1914102192
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         ffkv    + ++s++l+lp  f  ++ g++++ +k  tl+d + + W+v l   k+ g  v+++GWkeF+  + L +gDf++Fk+dg+sef
  Potri.007G035500.1  14 FFKVY--LSDFSSRQLSLPPAFGIQFnGKNEALPKNATLKDGNAKIWQVGL--VKREGDWVIKDGWKEFACYHSLVDGDFLIFKYDGSSEF 100
                         77887..88899999*******777779999********************..9999999***************************9999 PP

                         .. CS
                  B3  91 el 92 
                         e 
  Potri.007G035500.1 101 EV 102
                         54 PP
2B343.84.6e-142232861682
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                         +++pkkf++e++++   +k+++l+desg+ W v+ + + ++  +vlt+G +eF++ n+L  +D + +
  Potri.007G035500.1 223 IRIPKKFLRENNIE--LPKEIKLRDESGKLWPVQTSLWDSG-YTVLTSGFSEFCRMNKLVPRDQCKL 286
                         68*********866..889****************999886.789******************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.87212108IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-1813108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1813108IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-1514108IPR003340B3 DNA binding domain
PfamPF023624.5E-1714102IPR003340B3 DNA binding domain
CDDcd100172.79E-1714105No hitNo description
PROSITE profilePS508639.559208303IPR003340B3 DNA binding domain
SMARTSM010191.1E-4217300IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-14222286IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-11223286No hitNo description
PfamPF023623.9E-12223286IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-15223286IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVKPKRNVSF SNEFFKVYLS DFSSRQLSLP PAFGIQFNGK NEALPKNATL KDGNAKIWQV  60
GLVKREGDWV IKDGWKEFAC YHSLVDGDFL IFKYDGSSEF EVELYGNDGL KNNGLKKEGR  120
GLENKLSIHV KEELETEEDF IGSRPSTGCK QKDSNIEPRI TRSQGLFGKS GPKSSETKIA  180
KLGECKGAKA PSSVPREVPR FVMNITKITR FAGQGNMCSP IAIRIPKKFL RENNIELPKE  240
IKLRDESGKL WPVQTSLWDS GYTVLTSGFS EFCRMNKLVP RDQCKLFAGV PELKTWLEVE  300
SMTACPTFII IG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G035500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461032.10.0putative B3 domain-containing protein At5g66980
TrEMBLA0A2K1ZNR60.0A0A2K1ZNR6_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11890.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Representative plantOGRP8585614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-25B3 family protein