PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G028800.2 | ||||||||
Common Name | POPTR_0007s12520g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 537aa MW: 55785.5 Da PI: 8.2628 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Potri.007G028800.2 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Potri.007G028800.2 144 WKCDKCSKKYAVQSDWKAHSKIC 166 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 67 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.91E-7 | 67 | 90 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 109 | 139 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.9E-4 | 132 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.91E-7 | 139 | 164 | No hit | No description |
SMART | SM00355 | 150 | 144 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MPVDLDNSST ASGEASVSSS GNQPPPPQQP PSKSAATAKK KRNLPGMPDP EAEVIALSPK 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS SKDVKKRVYV CPEPTCVHHD 120 PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKICGTRE YKCDCGTLFS 180 RRDSFITHRA FCDALAEESA RAQTQTPNPN PKPNQESDPK VQVDSSPPPA PVAPPVAPDF 240 GSDQGQAPPG LAQSTGMISS PVLAIQSPEL SDDPSQIIEE APAPAPAPAP APAPATVTAG 300 FNGSFSSSTS SSSNGSSTSS VFASLFASST ASGSLQAPQT TAFTDLIHAM AHPDRPTDLT 360 PSSTEPISLC LSTNHGSSIF GTAGQERRQY APPPQPAMSA TALLQKAAQM GAAATNASLL 420 RGLGIVSSSS SSAQPDNMQW GHRQMEPENA SVTAGLGLGL PCDGGSGLKE LMMGTPSVFG 480 PKHATLDFLG LGMAAGGSPS GGLSALITSI GGGLDVAAAA ASFGGGEFSG KDMRRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-35 | 140 | 208 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 3e-35 | 140 | 208 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12952 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}. | |||||
Uniprot | TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G028800.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380751.1 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9LVQ7 | 0.0 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | U5G4W2 | 0.0 | U5G4W2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s12520.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-142 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G028800.2 |
Entrez Gene | 18101209 |
Publications ? help Back to Top | |||
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