 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.007G026300.1 |
| Common Name | POPTR_0007s12760g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 595aa MW: 65404.7 Da PI: 4.6083 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.007G026300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 348.7 | 9.7e-107 | 228 | 594 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
++L+ecA+ v+s+ + a + L + ++l+s++gdp++R+ +yf+e+L +r+a + + l+ ++ +s+e + ++k++++++P+ kf
Potri.007G026300.1 228 KALVECAQLVESKADQ-AVKSLVKCKDLVSENGDPVERAGFYFAEGLCRRVAV---GELDVLKNFDQ---TSEEFTLSYKALNDACPYSKF 311
79********996655.55667789***************************9...33344444444...48999**************** PP
GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
+hltaNqaIlea+e+++++Hi+Df+i +G+QW+aLlqaLa+R++g+p ++Ri g+ +p g + +l +tg+rL ++A+ lg++fef++
Potri.007G026300.1 312 AHLTANQAILEATEKASKIHIVDFGIVHGVQWAALLQALATRSAGKPvRIRISGIPAPVLGknPAASLLATGNRLLDYAKLLGLNFEFEP- 401
*******************************************88777*********9988889999***********************. PP
GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
+ + +++l+ + +r +p+E+laVn++lql++lldes + + Lk+ ksl+P +v++ e ea++n+ +l+rf +al+yy+a+f+sle
Potri.007G026300.1 402 ILTPIQELNESCFRAEPDEVLAVNFMLQLYNLLDESPVAVE---TALKMAKSLNPIIVTLGEYEASLNRVGYLTRFKNALRYYTAVFESLE 489
799******************************99988888...9********************************************** PP
GRAS 273 aklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.l 360
+l+r+s er vEr llg++i++vv e+ rrer+e + +W +e++GF++v+ls++a++qak ll ++ sd y++++++ ++ l
Potri.007G026300.1 490 PNLSRDSPERLQVERLLLGQRISSVVGPEEPGmRRERMEDKDQWGVLMESSGFESVSLSHYAMSQAKILLWYCNySDLYSLDDSQPGFLtL 580
***************************998866*****************************************9*******99877777* PP
GRAS 361 gWkdrpLvsvSaWr 374
W++ pL++vS+Wr
Potri.007G026300.1 581 AWNEVPLLTVSSWR 594
*************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 595 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QSHHHHHNQQ QQFLGLNPFS LNPWPTNIMS 60
ANPNLGYGLS GPAAFSDPFQ SGQETGDPPV FSFSNMEQHH SSGFRLPYFT GAGGEFDSDE 120
WMDSLMNGGD STDSSNLPSG CDAWQNSTDF GMYTSDPFNT CPSRLTVGCS PPSDLNGVLS 180
NSLWVAPSPP QEIKPTTSPP PLLPPTVKNE TVGGSEEIVQ LSSSPVLKAL VECAQLVESK 240
ADQAVKSLVK CKDLVSENGD PVERAGFYFA EGLCRRVAVG ELDVLKNFDQ TSEEFTLSYK 300
ALNDACPYSK FAHLTANQAI LEATEKASKI HIVDFGIVHG VQWAALLQAL ATRSAGKPVR 360
IRISGIPAPV LGKNPAASLL ATGNRLLDYA KLLGLNFEFE PILTPIQELN ESCFRAEPDE 420
VLAVNFMLQL YNLLDESPVA VETALKMAKS LNPIIVTLGE YEASLNRVGY LTRFKNALRY 480
YTAVFESLEP NLSRDSPERL QVERLLLGQR ISSVVGPEEP GMRRERMEDK DQWGVLMESS 540
GFESVSLSHY AMSQAKILLW YCNYSDLYSL DDSQPGFLTL AWNEVPLLTV SSWR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ511863 | 0.0 | KJ511863.1 Populus euphratica GRAS/SCL transcription factor (SCL7) mRNA, complete cds. |
