PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G275900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 353aa    MW: 39578.2 Da    PI: 6.089
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G275900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-1763110148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+ Ede lvd+vk +G g W+ I ++ g++R++k+c++rw +yl
  Potri.006G275900.1  63 KGAWTPLEDEMLVDYVKIHGEGKWSNIVKETGLKRCGKSCRLRWMNYL 110
                         79********************************************97 PP
2Myb_DNA-binding48.71.8e-15116159146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Potri.006G275900.1 116 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWHT 159
                         78999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.60158110IPR017930Myb domain
SuperFamilySSF466891.65E-2961157IPR009057Homeodomain-like
SMARTSM007173.2E-1562112IPR001005SANT/Myb domain
PfamPF002493.9E-1563110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2364117IPR009057Homeodomain-like
CDDcd001674.39E-1265110No hitNo description
PROSITE profilePS5129424.634111165IPR017930Myb domain
SMARTSM007171.2E-14115163IPR001005SANT/Myb domain
PfamPF002491.2E-13116159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-23118164IPR009057Homeodomain-like
CDDcd001678.76E-11120161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSDEVALFIA WTLHAIFGMY YWFDAIPKKS SRTSSRGHRA VASSEIQQEM GRKPRCSADG  60
MNKGAWTPLE DEMLVDYVKI HGEGKWSNIV KETGLKRCGK SCRLRWMNYL RPDIKRGNIS  120
DDEEDLIIRL HKLLGNRWSL IAGRLPGRTD NEIKNYWHTN IAKKAQHSQS RKQPGVDRKQ  180
IASGSENGAT ASNFKNQTIE SQYCTTGVVV PSTALQENNM AQDHLVSTLA MAPSNTHHEN  240
ESSSKGLASG DNDNLSNILM DFHYMEDFYK ILDSDFPKLS DLNDITSTAN HSNNTIQVDG  300
DHYSVSINGC NPREIAGFSE LLEADWTSNK CVQAEQGFDF MSLLSFLDLT DE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-266116525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G275900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5731500.0FJ573150.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB097) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382176.10.0transcription factor WER
TrEMBLA0A3N7F8N50.0A0A3N7F8N5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s29080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1659238
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-59myb domain protein 3