PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.006G256300.1

Common Name

POPTR_0006s27240g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 671aa MW: 77830.4 Da PI: 6.709

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.006G256300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.9	8.1e-24	59	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w++ ++eleHnH+++ Potri.006G256300.1 59 DFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVVIRLVDSKRWRIVDVELEHNHPVN 143 6*******************999*************99888.....9********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	59	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.0E-24	266	351	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.112	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-4	556	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.2E-7	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MEEVCLNSEP VFDEGDDYEV EGDSSAVGCD DETGENCSKK ERPEPTVGLE FDSFDEAYDF 60 YNVYAKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMVV 120 IRLVDSKRWR IVDVELEHNH PVNPQIKRFY KSHKRMILAA KKAQPPPEPV TEVHTIRLHR 180 RALMNTGCNV YLNVDERGHV DHVDHFKHLE LKEGDALAVY NYFCRMKLTN PNFFYLMDLD 240 DEGRLRNVFW ADARSRVAYG FFCDTVTIDT TCLANRYEIP LISFVGVNHH GQSVLLGCGF 300 LGHESMEYFV WIFRAWIKCM QGHLPQVIIT DQNKPLQSAV SEVFPNARHC YNVCCITQRV 360 PERLGGLQGY EAIKRQLNKA VYNSLKIAEF ETSWADMIKC HGLGDNKWLQ TLYKERQAWV 420 PVYLKDIFFV GMIPIQEDES LNAFFDGYVH KHTSFKEFVD KYDLALHRKH MKEAMADLES 480 TNSSYELKTR CNFEVQLSKV YTKEIFRKFQ SEVEGMYSCF NTKQLRVNGQ IATYIVKERV 540 EVAGSEKEVR HFEVLYDTSQ ADIRCICCLF NYKGYLCRHA LNVLNYNGVE EVPSRYILPR 600 WGKDYKRRGL LDHNSGDVDV DNPIYWHNLL YRYAIPVVEV GAESSDHYKI ALQELEELLN 660 KFNLAEDNLV *

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MEEVCLNSEP VFDEGDDYEV EGDSSAVGCD DETGENCSKK ERPEPTVGLE FDSFDEAYDF  60
YNVYAKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMVV  120
IRLVDSKRWR IVDVELEHNH PVNPQIKRFY KSHKRMILAA KKAQPPPEPV TEVHTIRLHR  180
RALMNTGCNV YLNVDERGHV DHVDHFKHLE LKEGDALAVY NYFCRMKLTN PNFFYLMDLD  240
DEGRLRNVFW ADARSRVAYG FFCDTVTIDT TCLANRYEIP LISFVGVNHH GQSVLLGCGF  300
LGHESMEYFV WIFRAWIKCM QGHLPQVIIT DQNKPLQSAV SEVFPNARHC YNVCCITQRV  360
PERLGGLQGY EAIKRQLNKA VYNSLKIAEF ETSWADMIKC HGLGDNKWLQ TLYKERQAWV  420
PVYLKDIFFV GMIPIQEDES LNAFFDGYVH KHTSFKEFVD KYDLALHRKH MKEAMADLES  480
TNSSYELKTR CNFEVQLSKV YTKEIFRKFQ SEVEGMYSCF NTKQLRVNGQ IATYIVKERV  540
EVAGSEKEVR HFEVLYDTSQ ADIRCICCLF NYKGYLCRHA LNVLNYNGVE EVPSRYILPR  600
WGKDYKRRGL LDHNSGDVDV DNPIYWHNLL YRYAIPVVEV GAESSDHYKI ALQELEELLN  660
KFNLAEDNLV *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.006G256300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213425	0.0	AC213425.1 Populus trichocarpa clone POP064-M05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002309639.3	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X1
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2K2A8A9	0.0	A0A2K2A8A9_POPTR; Uncharacterized protein
STRING	POPTR_0006s27240.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Potri.006G256300.1
Entrez Gene	7471602

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]