PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G234300.1
Common NamePOPTR_0006s25080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 391aa    MW: 42667.9 Da    PI: 7.86
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G234300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07127147526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+ f++ G Ck Gd C FaHg
  Potri.006G234300.1 127 ACPEFRK-GGCKKGDACEFAHG 147
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.77574111IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.333123149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4127149IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5127147IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.042157181IPR000571Zinc finger, CCCH-type
SMARTSM0035611157180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MMMIGELSHH RSNPTVQIPQ WDPYEEQTTT SPSLSPIPTS PFTNFNALDS LTSLHRYLPS  60
NEPDPTFEDE LDLPVDAFSC DHFRMYEFKV KRCARGRSHD WTECPYAHPG EKARRRDPRR  120
YHYSGTACPE FRKGGCKKGD ACEFAHGVFE CWLHPARYRT QPCKDGPACR RRVCFFAHTP  180
EQLRLLPQQS PKGNGSGSGL GSGEYDFGSP VIHPFDSYMT KAGIFVSSPT SILTSPPVSP  240
PSDSPPMSPV SPQVIGGSGP GSLNSMSALL ASMRGLQVGK AKMGSPVGSW GVQSGFRFGS  300
PRGSSLRPGF CSLPSTPTRT MASRSGLSQL DIWGDGVTCE EEPAMERVES GRDLRAKIYA  360
KLSKENSVDR DRGDSGVSGP DVGWVSELVK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.44760.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G234300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460027.10.0zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-125C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLB9HE040.0B9HE04_POPTR; Uncharacterized protein
STRINGPOPTR_0006s25080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-103C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]