PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G231300.1
Common NamePOPTR_0006s24740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 397aa    MW: 45209.5 Da    PI: 4.5486
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G231300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.31.3e-18161491128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiy...kvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                         +p G+rFhP d+elv +yL kk+++ + +++ +v ++++ ++     ePw++  +  k + ++++fF++  kk ++  rk      g+W++
  Potri.006G231300.1  16 MPHGYRFHPDDQELVRFYLYKKITDPDlFTAINVpVRDCPLFgdqAREPWQIWdSFPKRHGEDLFFFTHLTKKGKNFVRKIC-RGPGTWHQ 105
                         699**********************99644434457777655221679****734445567789999999998776554443.468***** PP

                 NAM  86 tgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+ +  ++   + ++  +kk ++++  + ++ ++ +W+m ey+l
  Potri.006G231300.1 106 ECKHPPFNVSidhTCQVAAIKKLFTYH--NPKSDQNGSWFMFEYSL 149
                         ***998888766566678999999999..45555699*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-2011164IPR003441NAC domain
PROSITE profilePS5100522.80116164IPR003441NAC domain
PfamPF023652.2E-1517149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAMSILQNPE TITPQMPHGY RFHPDDQELV RFYLYKKITD PDLFTAINVP VRDCPLFGDQ  60
AREPWQIWDS FPKRHGEDLF FFTHLTKKGK NFVRKICRGP GTWHQECKHP PFNVSIDHTC  120
QVAAIKKLFT YHNPKSDQNG SWFMFEYSLP SLSEQTVLCQ LKRKEVHASE KVQTTSTTTK  180
KRKRYADGLD GATNTMFQKP RVEEDAQKQQ IMGFNGAAKI VSQVENQQLH LELEPVFDNG  240
VQPDNFESFY CEPSAVLEYD LMDADSGITS TCNAATPTVF MLDPAENLQP SDDDDFHPEI  300
FGLLDLSGYC DEEDGFPATW ETAEASAYWV QATPTIDPSF TADAIDYYLE RGVSDSSLTN  360
CSGSFLQMQP EADPTSPIQE NEIQMISNPF HMERYR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161183KRKEVHASEKVQTTSTTTKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G231300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2843710.0GU284371.1 Populus balsamifera isolate KUU07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999305.11e-149PREDICTED: NAC transcription factor 29-like
TrEMBLB9HDP70.0B9HDP7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-11NAC-domain protein 101