PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G221800.2
Common NamePOPTR_0006s23840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 204aa    MW: 22771.3 Da    PI: 5.8654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G221800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.6e-092262247
                        T-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                        ++W++Ia +++ gRt++++k++w++ 
  Potri.006G221800.2  2 RRWSLIAGRLP-GRTDNEIKNYWNTT 26
                        57*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001677.13E-7127No hitNo description
PROSITE profilePS5129416.772131IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-12227IPR009057Homeodomain-like
SuperFamilySSF466898.07E-7231IPR009057Homeodomain-like
PfamPF002491.5E-6326IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRRWSLIAGR LPGRTDNEIK NYWNTTLGKK ATAQASPQSK QNSQSFKKRA IEPMTNTQSS  60
KSTLATQVIP TKATRCTKVF LSLQSPPPPI LPPKTLSSTA IDDPPQAPLL NHQQDSPNLH  120
GHDDSDFLNF GHWNEFQSSD GGTLIDNDCD KNLSIDSYHS LALSDDLMFK DWALNRCLDD  180
NSTLDLESLA HLLDSEEWPE MRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G221800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5731510.0FJ573151.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB134) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308528.11e-145myb-related protein 308
TrEMBLB9HD161e-144B9HD16_POPTR; Uncharacterized protein
STRINGPOPTR_0006s23840.11e-145(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-13MYB family protein