PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G221500.3
Common NamePOPTR_0006s23810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 242aa    MW: 27166.8 Da    PI: 5.1747
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G221500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-163882147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Potri.006G221500.3 38 RGNISPDEEDLIIRLHKLLGNR-WALIAGRIP-GRTDNEIKNYWNST 82
                        7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.193132IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.5E-111844IPR009057Homeodomain-like
SuperFamilySSF466897.27E-201890IPR009057Homeodomain-like
PROSITE profilePS5129425.4023387IPR017930Myb domain
SMARTSM007176.2E-163785IPR001005SANT/Myb domain
PfamPF002491.0E-143882IPR001005SANT/Myb domain
CDDcd001675.12E-124283No hitNo description
Gene3DG3DSA:1.10.10.602.4E-204584IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MYSCMTNSKR TVIGTGLKRC GKSCRLRWLN YLKPDVKRGN ISPDEEDLII RLHKLLGNRW  60
ALIAGRIPGR TDNEIKNYWN STLKRKVQAN DQKQPRRGNK DTKKQTRKTS TGLNKAAPCT  120
NSSLPSPPVL AENIETDQIL TASSIEEGTL EKYLIENPNS NDELLLFTND NDVPCNFLMD  180
LDMGQMSFSD FLQTDIFSDS NNMLVNGPAP SYPDEASLFP EAMLQNWICE DGFELELAMG  240
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23118731108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G221500.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5885480.0FJ588548.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB183) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309470.21e-167transcription factor WER
TrEMBLB9HD141e-166B9HD14_POPTR; MYB family protein
STRINGPOPTR_0006s23810.11e-167(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-41MYB family protein