PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G221500.1
Common NamePOPTR_0006s23810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 268aa    MW: 30028.9 Da    PI: 5.2333
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G221500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-171158148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg WT+ Ed++l  +v+ +G g+W++++++ g++R++k+c++rw++yl
  Potri.006G221500.1 11 RGTWTATEDKILTAYVRNYGEGNWARVPKETGLKRCGKSCRLRWLNYL 58
                        89********************************************97 PP
2Myb_DNA-binding50.74.1e-1664108147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Potri.006G221500.1  64 RGNISPDEEDLIIRLHKLLGNR-WALIAGRIP-GRTDNEIKNYWNST 108
                         7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.906658IPR017930Myb domain
SuperFamilySSF466894.69E-299105IPR009057Homeodomain-like
SMARTSM007171.8E-131060IPR001005SANT/Myb domain
PfamPF002491.1E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-221265IPR009057Homeodomain-like
CDDcd001679.16E-111358No hitNo description
PROSITE profilePS5129425.40259113IPR017930Myb domain
SMARTSM007176.2E-1663111IPR001005SANT/Myb domain
PfamPF002491.2E-1464108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2466113IPR009057Homeodomain-like
CDDcd001671.71E-1168109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRSPTGGII RGTWTATEDK ILTAYVRNYG EGNWARVPKE TGLKRCGKSC RLRWLNYLKP  60
DVKRGNISPD EEDLIIRLHK LLGNRWALIA GRIPGRTDNE IKNYWNSTLK RKVQANDQKQ  120
PRRGNKDTKK QTRKTSTGLN KAAPCTNSSL PSPPVLAENI ETDQILTASS IEEGTLEKYL  180
IENPNSNDEL LLFTNDNDVP CNFLMDLDMG QMSFSDFLQT DIFSDSNNML VNGPAPSYPD  240
EASLFPEAML QNWICEDGFE LELAMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2991135108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G221500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5885480.0FJ588548.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB183) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309470.20.0transcription factor WER
TrEMBLB9HD140.0B9HD14_POPTR; MYB family protein
STRINGPOPTR_0006s23810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.19e-55MYB family protein