PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G221400.1
Common NamePOPTR_0006s23800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 619aa    MW: 70311 Da    PI: 6.3052
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G221400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.41.3e-30421505186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+k+ev aLi++r+++e ++++  lk+plWeevs+ m++ g++rs+k+Ckekwen+nk+++k +e+ k++ s +s+tc+yf+ql+
  Potri.006G221400.1 421 KWPKDEVEALIQVRSRIEIKFQEPGLKGPLWEEVSSLMSSMGYQRSAKRCKEKWENINKYFRKARESPKRG-SARSKTCSYFNQLD 505
                         7*********************************************************************9.77888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.399414478IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.5E-4419477IPR009057Homeodomain-like
PfamPF138372.3E-21420507No hitNo description
CDDcd122033.07E-25420485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MQPSYGLPNI DHHQQQQQQR QQHLMEDDYS CSPSVLPISN LQNLNYPYQP HLHHYLQQHK  60
HPHQVLLQQH HQLFYPFQQQ QQVQGQSQDQ VNPSLFSVNF KWGRDYEDSG DKKAGALNNQ  120
EEAACTTTNT TTFLDGNVHS NPPHAILMPH SWHPREDSTT LKEPFWKQLN KQRSGSEEKE  180
INESKTSYFS PLEMEQVVDE SSEGCKNLES KFPLFNELQA IYSLAQIAEA NQTGSGSVLT  240
CDNSPTNAGL SMPCNASNGQ NVGACGAANN VIGVDRGSEN SIGEEASLRK CRRRKRKGKL  300
KEKLNYIAGF FENSVKKVMN HQEMLHRKFL EVIERMDKER AEREATWRRQ EAEKYSREAI  360
SLAHERASAS SREAQIISYI EKITGQSINL LTRMAPPLLQ PEISNEPIKE ITPTKTDSHS  420
KWPKDEVEAL IQVRSRIEIK FQEPGLKGPL WEEVSSLMSS MGYQRSAKRC KEKWENINKY  480
FRKARESPKR GSARSKTCSY FNQLDQLYSG TLINYPANTT DMPSSGIEFG IKKQGYTELF  540
EVFSVRRDYL ANVRNPLGVS VISSEMGSSR SEFDGFSDQN TELEEGSSEQ DIEAYKDDKQ  600
KDGEQQNGGG GGDEEIEN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288296RKCRRRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G221400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308526.20.0trihelix transcription factor GTL1
TrEMBLB9HD130.0B9HD13_POPTR; Uncharacterized protein
STRINGPOPTR_0006s23800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Representative plantOGRP6631573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-44Trihelix family protein