PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G209200.1 | ||||||||
Common Name | POPTR_0006s22580g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 269aa MW: 30922.3 Da PI: 5.4693 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.1 | 2.6e-43 | 3 | 138 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...leleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 ppGfrF Pt+eelv++yL++k+e+++ l++ + i+ +diy+++Pw+Lp+ ++++ +ew+fF++r++++a+g r++r t+sgyWk Potri.006G209200.1 3 PPGFRFYPTEEELVSFYLHNKLEARRedlLRVMDRlIPVLDIYEFNPWELPQfsgdLCHGDPEEWFFFIRRQESEARGGRPKRLTSSGYWK 93 9***********************9977744434449999***********656764455778**************************** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+ +v+s+ +++ +g k+t+vfy+grap+g+kt+W m+e+++ Potri.006G209200.1 94 ATGSPSPVYSSnSNRSIGEKRTMVFYEGRAPRGRKTEWKMNEFKA 138 *********9966778***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 49.43 | 2 | 167 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-46 | 2 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-22 | 3 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MIPPGFRFYP TEEELVSFYL HNKLEARRED LLRVMDRLIP VLDIYEFNPW ELPQFSGDLC 60 HGDPEEWFFF IRRQESEARG GRPKRLTSSG YWKATGSPSP VYSSNSNRSI GEKRTMVFYE 120 GRAPRGRKTE WKMNEFKAME EEAEASYSNG GHPRLRQEFS LCRVYKKSKF VRAFDRRPSG 180 VEMGTEMRAQ ATPGNEVTSS SSHQNPSTAE TVPCSHAILS LGDHGQTFQT GESSYTASID 240 TDNEPIWDWE QLEWCYSDRD NIEKVQSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-32 | 2 | 167 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-32 | 2 | 167 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-32 | 2 | 167 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-32 | 2 | 167 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-32 | 2 | 167 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-32 | 2 | 167 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-32 | 2 | 167 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-32 | 2 | 167 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-32 | 2 | 167 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-32 | 2 | 167 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-32 | 2 | 167 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-32 | 2 | 167 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-32 | 2 | 167 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-32 | 2 | 167 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G209200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216672 | 0.0 | AC216672.1 Populus trichocarpa clone POP018-I12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309417.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 3e-79 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | B9HBX6 | 0.0 | B9HBX6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s22580.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-81 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G209200.1 |
Entrez Gene | 7492242 |
Publications ? help Back to Top | |||
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