PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G203000.5
Common NamePOPTR_0006s21950g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 679aa    MW: 73697.1 Da    PI: 6.972
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G203000.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093774141954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Potri.006G203000.5 377 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 414
                         554459******************************88 PP
2BELL124.15.4e-40241312172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erqe+++kkakL+s+l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi
  Potri.006G203000.5 241 ERQEIHMKKAKLMSMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALKTISKQFRCLKDAITGQI 312
                         79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-61164310IPR006563POX domain
PfamPF075261.4E-49170309IPR006563POX domain
PROSITE profilePS5007112.195355418IPR001356Homeobox domain
CDDcd000862.33E-12358419No hitNo description
SMARTSM003895.3E-9358422IPR001356Homeobox domain
SuperFamilySSF466896.84E-17359425IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-29361425IPR009057Homeodomain-like
PfamPF059202.8E-18375414IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MATYFHGNPE IQAAAASAEG LQTLVLMNPT YVQYSETPPP PQSNNLVFLN AAASAAANSL  60
SPPPHLSGHA PSNTQQFVGI PLDPNSHEAS TLHGLIPRVH YNFYNPIDST STARETPRAQ  120
QGLSLSLSSQ QQGGFGSQAQ AVSGEDIRVS GGLVSPGSGV TNGVPGMQGV LLSSKYLKAT  180
EELLDEVVNV NSNGIKSELS KKSNGISSNN SNKVIGESST GEGSGEGEAS GKRGPELSTA  240
ERQEIHMKKA KLMSMLDEVE QRYRQYHHQM QIVISSFEQA AGIGSAKTYT ALALKTISKQ  300
FRCLKDAITG QIKAANKSLG EEDCLGGKIE GSRLKFVDHH LRQQRALQQL GMIQHNAWRP  360
QRGLPERSVS VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT RSQVSNWFIN ARVRLWKPMV  420
EEMYMEEIKE QEQNGSEDKT SKSEHNEDAA SRSVLQEKGS VNGNLTRSFK SLDNSPDAPS  480
AISIPTSSTS PVGGNLRNQS GFSFMGSSEL DGITQGSPKK PRSHDLIQSP TSVPSINMDI  540
KPGEANNEQV SMKFGDERQS RDGYSFIGGQ TNFIGGFGQY PMGEIGRFDG EQFTPRFSGN  600
GVSLTLGLPH CENLSLSGTH QTFLPNQNIQ LGRRVEIGEP NEYGALNTST PHSSTAYESI  660
DIQNRKRFIA QLLPDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16364422563Homeobox protein Meis2
3k2a_B3e-16364422563Homeobox protein Meis2
4xrs_A3e-16364421158Homeobox protein Meis1
4xrs_B3e-16364421158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.10030.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G203000.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0288670.0CT028867.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308323.30.0BEL1-like homeodomain protein 1
RefseqXP_006381945.20.0BEL1-like homeodomain protein 1
RefseqXP_006381946.20.0BEL1-like homeodomain protein 1
RefseqXP_006381947.20.0BEL1-like homeodomain protein 1
RefseqXP_006381948.20.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2K2A5870.0A0A2K2A587_POPTR; Uncharacterized protein
TrEMBLA0A385JI420.0A0A385JI42_POPTO; BEL1-like homeodomain 1
STRINGPOPTR_0006s21950.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-167BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]