PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G186600.1
Common NamePOPTR_0006s20070g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 450aa    MW: 47467.9 Da    PI: 6.6002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G186600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.2e-12251296555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Potri.006G186600.1 251 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 296
                         99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17244306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-13244300No hitNo description
PROSITE profilePS5088817.39246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16248305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9251296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MRPCSREMQG MNSLLNPSSQ IPLQDLQNQQ IQNSHFDPNS SSNDDFLEQM LSAIPSCSWA  60
DPKSPWDLNP PTNLPFPTNN NSSSAKPRDL FNETPPSNTD NNNVGFHDNF DESVILASKL  120
RQHQISGGSG AAAAAKMMLQ QQLLMAAARG GLSQNDDIDV SPTQGGDGSM QGLFNGFRAG  180
SMNGTVRASN QSMQHFNHPQ GGAMQSPNLG AQGAATTAVM NQPQASGSNG GAPAQPRQRV  240
RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID YVKFLQLQVK  300
VLSMSRLGGA AAVAPLVADM SSEAGGDCIQ ANANGGSIAR TTNGNQTAST NDSSLTVTEH  360
QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCHN RTSGIINSHN PLLQSNGEGP  420
TSPSMSVLTV QSATMGNGVA KDAASVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G186600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479390.0EF147939.1 Populus trichocarpa clone WS0126_B22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460150.10.0transcription factor bHLH66
SwissprotQ9ZUG99e-88BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2K2A4B60.0A0A2K2A4B6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-60LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]