PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G186300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25317.6 Da PI: 6.9257 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.2 | 5.5e-10 | 45 | 92 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV + +g W ++I+ + +r++lg+f ++ eAa a++ a+ kl+ Potri.006G186300.1 45 SRFKGVVPQP-NGHWGCQIYA------NhQRIWLGTFKSEREAAMAYDSAAIKLR 92 6899**8777.8******999......44**********99************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.86E-15 | 45 | 102 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.10E-22 | 45 | 103 | No hit | No description |
Pfam | PF00847 | 4.1E-6 | 45 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-19 | 46 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.016 | 46 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-17 | 46 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-6 | 163 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEEETVSLIL NAETSVIEEL SDSNSSTHPF PPNKRARSGR NVSASRFKGV VPQPNGHWGC 60 QIYANHQRIW LGTFKSEREA AMAYDSAAIK LRSGDSRRNF PPTDITVQEP KFQSYYSIEV 120 VLAMIKDGTY QSKFADFIRT CSQSVETALS LKLMMPQSSE GLTCKQLFRK ELTPSDVGLV 180 IPKKYAIKYF PNISESAEED EAADKSELCL HQGLESIREG KKIEGK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G186300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215840 | 0.0 | AC215840.1 Populus trichocarpa clone POP043-C12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458800.1 | 1e-151 | AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
Refseq | XP_024458801.1 | 1e-151 | AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
Refseq | XP_024458802.1 | 1e-151 | AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
Refseq | XP_024458803.1 | 1e-151 | AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
Swissprot | Q9C688 | 3e-58 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A3N7F9G4 | 1e-150 | A0A3N7F9G4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s11780.1 | 1e-125 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5000 | 31 | 56 | Representative plant | OGRP10227 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 5e-58 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G186300.1 |