PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G167700.1
Common NamePOPTR_0006s18330g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 546aa    MW: 59523.4 Da    PI: 8.3031
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G167700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.2e-15172231155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Potri.006G167700.1 172 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 231
                         57*******************666664477446*************************98 PP
2AP247.15.8e-15274325155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.006G167700.1 274 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 325
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-17172241IPR016177DNA-binding domain
PfamPF008473.2E-12172231IPR001471AP2/ERF domain
CDDcd000188.69E-23172241No hitNo description
SMARTSM003804.6E-30173245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-16173240IPR001471AP2/ERF domain
PROSITE profilePS5103219.23173239IPR001471AP2/ERF domain
PRINTSPR003672.4E-6174185IPR001471AP2/ERF domain
PfamPF008477.2E-10274325IPR001471AP2/ERF domain
CDDcd000184.55E-25274335No hitNo description
SuperFamilySSF541717.85E-18274335IPR016177DNA-binding domain
SMARTSM003801.5E-33275339IPR001471AP2/ERF domain
PROSITE profilePS5103219.045275333IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18275334IPR001471AP2/ERF domain
PRINTSPR003672.4E-6315335IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MDSSSHQNWL GFSLSNHHHM NNTINIPTSS DSSHLCLFEA FNTTTTSAQE VNAVVAAGRA  60
TDISLFTASG PKLEDFLGGC TSTSPSQTPQ QQPLCGQFST ETPVTTTATA LSDSTSSEIY  120
DSELKTIAAS FLRGFASTDH QKIDSTQKHQ QLLVQAEHAP KKTVETFGQR TSIYRGVTRH  180
RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTTTTNFPV  240
SNYEKEIEGM KHMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD  300
LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK NIANSNLPIG GISGKSKNSS  360
ESASDSKSID GSRSDDRDLS SASSVTFASQ PATSTLSFAI PIKQDPSDYW TNILGYQNTT  420
TMNNAKNSSS SIVDPSTLLQ SSTSGPAFQS PTVFKMDFNA NSSVNESNNN GLLFNGGYTQ  480
QQISGIGTSS PSSNIPFATP IAFHSNGNSY EGNPSYSSWI AQPLHSFQSA KPKLSVYQTP  540
IFGIE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.70840.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G167700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453130.0EF145313.1 Populus trichocarpa clone WS01123_C06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381802.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-169AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLU5GBJ10.0U5GBJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s18330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-147AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]