PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G156600.1
Common NamePOPTR_0006s17670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 288aa    MW: 31296.2 Da    PI: 5.7952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G156600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-1867117155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Potri.006G156600.1  67 PVFRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 117
                         579****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-1267117IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2168125IPR016177DNA-binding domain
PROSITE profilePS5103222.62968125IPR001471AP2/ERF domain
SMARTSM003803.1E-3468131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3068125IPR001471AP2/ERF domain
PRINTSPR003671.6E-96980IPR001471AP2/ERF domain
CDDcd000181.53E-3069125No hitNo description
PRINTSPR003671.6E-991107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTDPLTSNSN SKKDSSSIYS YFSSPTPSST SSSGLSPNPV SKPDPEKNLR KPKRPRETNS  60
SNNSKHPVFR GVRMRTWGKW VSEIREPRKK NRIWLGTFST PEMAARAHDV AALSIKGNSA  120
ILNFPGLAGS LPRPASNSPR DVQAAAAKAA SMDFNSTVTT VTTNVCNDEN NSNNNSTASN  180
NNGSSSSQMT QSSSSSSSSS SSTVRVTSDV ATPEELSEIV ELPSLETSYE ESPEFVLFGD  240
SWPYINQSWC YEDYGVKSNG YFSDQYLSII PENNVITSGF ETLLWEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1963125972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G156600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2170320.0AC217032.1 Populus trichocarpa clone POP013-C12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381752.10.0ethylene-responsive transcription factor ERF043
SwissprotQ9M0804e-54ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLU5GBE60.0U5GBE6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s17670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.14e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]