PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G150000.4
Common NamePOPTR_0006s15450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HRT-like
Protein Properties Length: 566aa    MW: 62796.2 Da    PI: 9.3884
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G150000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like54.81.5e-17140170131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCG+i+ dG++C+r+Pv+g+KRCeeHKG+R+
  Potri.006G150000.4 140 ICGFIMVDGIPCRRPPVPGGKRCEEHKGRRV 170
                         8*****************************7 PP
2HRT-like61.41.4e-19204234131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l+dG++C++q+v gRKRCeeHKGmR+
  Potri.006G150000.4 204 TCGVNLGDGTFCRKQAVAGRKRCEEHKGMRV 234
                         7*****************************7 PP
3HRT-like58.11.5e-18293323131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP+ g+KRC++HKG+R+
  Potri.006G150000.4 293 TCGVMLGNGSFCRRQPILGNKRCWQHKGQRV 323
                         7*****************************7 PP
4HRT-like58.11.5e-18387417131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP+ g+KRC++HKG+R+
  Potri.006G150000.4 387 TCGVMLGNGSFCRRQPILGNKRCWQHKGQRV 417
                         7*****************************7 PP
5HRT-like58.79.4e-19481511131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv+l++Gs+C+rqP++g+KRC++HKG+R+
  Potri.006G150000.4 481 TCGVMLGNGSFCRRQPIQGNKRCWQHKGKRV 511
                         7*****************************7 PP
6HRT-like58.11.5e-18529559131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iC v+l+dGsvC r Pv+gRKRC +HKGmR+
  Potri.006G150000.4 529 ICEVTLRDGSVCLRAPVQGRKRCDQHKGMRV 559
                         8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MDVGARLKRE DYKRTKHDSS FSKWQMKDKR DAEETEGKLL GTFDYAWNKG SNGTRRPSDV  60
LQNLNSRTTR PPDIFQWLPF SSHKLGGIKI KASKPLSPEK HAGFGDEDSK KLFFGIFKLS  120
RSQPRLVTDK YGINEDSDCI CGFIMVDGIP CRRPPVPGGK RCEEHKGRRV YGSSYKSIAQ  180
RNLHYPHGAN LDSTTHNDRE HETTCGVNLG DGTFCRKQAV AGRKRCEEHK GMRVNTSVLE  240
PAAEDKIRMS APSSVFNSFA DGVNNNASSK HNADSTWQCG SSNNPVKEHF PNTCGVMLGN  300
GSFCRRQPIL GNKRCWQHKG QRVECNLSGV DSSEPAAEEK IRMSAPSSVF NSFADSVNNN  360
ASSKHNADST WQCGSSNNPV KEHFPNTCGV MLGNGSFCRR QPILGNKRCW QHKGQRVECN  420
LSGVDSSEPA AEEKIRMSAP SSVFNSFADS VNNNASSKHN AYSTWQCGSS NNPVKELFPN  480
TCGVMLGNGS FCRRQPIQGN KRCWQHKGKR VECNFSGVDS SSLRFDAPIC EVTLRDGSVC  540
LRAPVQGRKR CDQHKGMRVS TSYHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G150000.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460011.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A2K2A2P60.0A0A2K2A2P6_POPTR; Uncharacterized protein
TrEMBLA0A2K2A2Q30.0A0A2K2A2Q3_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15450.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.17e-50effector of transcription2