PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G147400.1
Common NamePOPTR_0006s14940g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 276aa    MW: 30044.7 Da    PI: 8.6087
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G147400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.9e-13556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT eE+e l  +v+++G+g Wk I r          R+  ++k++w++ 
  Potri.006G147400.1  5 KQKWTSEEEEALRAGVAKHGTGKWKNIQRDPEfnpylYSRSNIDLKDKWRNM 56
                        79************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.812161IPR017930Myb domain
SuperFamilySSF466891.58E-16259IPR009057Homeodomain-like
SMARTSM007171.8E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-14556IPR009057Homeodomain-like
PfamPF002495.3E-9556IPR001005SANT/Myb domain
CDDcd116609.11E-21657No hitNo description
Gene3DG3DSA:1.10.10.101.4E-15116189IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.92E-16116199IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.1E-19117182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.842119187IPR005818Linker histone H1/H5, domain H15
PfamPF005386.3E-11121180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGTGKWKN IQRDPEFNPY LYSRSNIDLK DKWRNMTVSA  60
GSQSVKDKSR TTKVKSIPDA AAAATPLPNP QTSAASAAAA AAADVAIDDY SEAAADSKTA  120
PKYNAMIFEA ISAFNEPNGA DTSAIISYIE QRQELPQNFR RQLSSRLRRL VAQEKLEKVQ  180
NCYKIKKVSS FGTKTPTPKK EVRPKSVHDT GDTVEGAAND AAYSVAEAEN KSFVATEAVK  240
ESERVSKMSE DADSLLQLAN EILEKCLRGE IVIMG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G147400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308277.10.0telomere repeat-binding factor 4
TrEMBLB9HDX40.0B9HDX4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s14940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-67MYB_related family protein