PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G133200.9
Common NamePOPTR_0006s13550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 362aa    MW: 39130.2 Da    PI: 9.2135
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G133200.9genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.2e-33196252360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Potri.006G133200.9 196 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 252
                         9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-29183253IPR003657WRKY domain
SuperFamilySSF1182906.67E-26193253IPR003657WRKY domain
SMARTSM007741.8E-36194252IPR003657WRKY domain
PROSITE profilePS5081123.617196253IPR003657WRKY domain
PfamPF031062.5E-25196250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEIKESERVV IAKPVASRPS YSNFTSFSEL LAGAINTTPS NVCSGTAVAA IRPKTVRFRP  60
LVNRAPGALV SSQAGLSGTA VSNSFNKVSS TDSKATIIYK PQAKLVSKAT VSLLANMGNF  120
NTNSQQMLQP VETRPQLSKQ DKHNFSSQLT SNLHQNIPSP AEADHTTEPL RLTSLNQEED  180
PKTLSHASNG DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC TYPNCPVKKK VERSFDGQIA  240
EIVYKGEHNH SKPQPPKRNS SGTQGLSDGN APDRNSIPLW SNQLNERNEG SEGREENQNE  300
IGLPVHSIYQ GKAPPSYDPA GTGTINAGTG TSDNSCGVSG ECDDGSKGLE GANDEPKSKR  360
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181962531674WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.118960.0bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G133200.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796080.0EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381519.10.0WRKY transcription factor 44
RefseqXP_024459754.10.0WRKY transcription factor 44
RefseqXP_024459755.10.0WRKY transcription factor 44
RefseqXP_024459756.10.0WRKY transcription factor 44
RefseqXP_024459758.10.0WRKY transcription factor 44
RefseqXP_024459759.10.0WRKY transcription factor 44
TrEMBLU5GAH70.0U5GAH7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-67WRKY family protein