PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G133200.4 | ||||||||
Common Name | POPTR_0006s13550g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 476aa MW: 52013.6 Da PI: 9.3784 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.3 | 1.4e-32 | 196 | 252 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k Potri.006G133200.4 196 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHNHSK 252 9***************************************.***************85 PP | |||||||
2 | WRKY | 103.3 | 1.3e-32 | 394 | 451 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK vkg+++prsYYrCts +C+v+k+ver ++dp+++++tYeg+Hnhe Potri.006G133200.4 394 GDGFRWRKYGQKIVKGNPYPRSYYRCTSIKCNVRKHVERVSDDPRAFITTYEGKHNHE 451 5********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-29 | 183 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.02E-25 | 193 | 253 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-36 | 194 | 252 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.617 | 196 | 253 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-25 | 196 | 250 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.6E-34 | 378 | 453 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-28 | 387 | 453 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.991 | 388 | 453 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-37 | 393 | 452 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 395 | 451 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MEIKESERVV IAKPVASRPS YSNFTSFSEL LAGAINTTPS NVCSGTAVAA IRPKTVRFRP 60 LVNRAPGALV SSQAGLSGTA VSNSFNKVSS TDSKATIIYK PQAKLVSKAT VSLLANMGNF 120 NTNSQQMLQP VETRPQLSKQ DKHNFSSQLT SNLHQNIPSP AEADHTTEPL RLTSLNQEED 180 PKTLSHASNG DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC TYPNCPVKKK VERSFDGQIA 240 EIVYKGEHNH SKPQPPKRNS SGTQGLSDGN APDRNSIPLW SNQLNERNEG SEGREENQNE 300 IGLPVHSIYQ GKAPPSYDPA GTGTINAGTG TSDNSCGVSG ECDDGSKGLE GANDEPKSKR 360 RKTEIQSTEG GMSGEGVQEP RVVVQSSTDS EILGDGFRWR KYGQKIVKGN PYPRSYYRCT 420 SIKCNVRKHV ERVSDDPRAF ITTYEGKHNH EIPLKSTNLA AFEPDSQAPT TRVKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-31 | 196 | 453 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-31 | 196 | 453 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11896 | 0.0 | bud| catkin |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G133200.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF179608 | 0.0 | EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381519.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459754.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459755.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459756.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459758.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_024459759.1 | 0.0 | WRKY transcription factor 44 | ||||
TrEMBL | U5GAH7 | 0.0 | U5GAH7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s13550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 1e-112 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G133200.4 |
Entrez Gene | 18100250 |