PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G132400.2 | ||||||||
Common Name | POPTR_0006s13460g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 473aa MW: 51850.4 Da PI: 6.7788 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.5 | 5.2e-16 | 162 | 211 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+ +++a+ k++g Potri.006G132400.2 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARVYDRAAIKFRG 211 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.3 | 3.8e-13 | 254 | 304 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g Potri.006G132400.2 254 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSETEAARAYDKAAIKCNG 304 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-7 | 162 | 211 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-15 | 162 | 220 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.97E-23 | 163 | 221 | No hit | No description |
PROSITE profile | PS51032 | 17.293 | 163 | 219 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-16 | 163 | 219 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-32 | 163 | 225 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-17 | 254 | 313 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.6E-9 | 254 | 304 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.35E-26 | 254 | 314 | No hit | No description |
PROSITE profile | PS51032 | 15.712 | 255 | 312 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-16 | 255 | 312 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-32 | 255 | 318 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 256 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 294 | 314 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MMLDLNLSAV SGDSSTTGKN NKHKQKKILE LSNPPLESSG SFDSSSIVNA DGCGDEDSCS 60 NGDLFAYNFS ILSNEISVKK TVDCDNYNND DGDDSGDRTI QLFPVACGIK NVGGESQSSS 120 TMQMQWSGVG ECRDQGSPSE NGIVAQQKPV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI 180 WDCGKQVYLG GFDTAHAAAR VYDRAAIKFR GVDADINFNV TDYDEDIKQM RNFTKEEFVH 240 ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSETE AARAYDKAAI 300 KCNGREAVTN FEPSTYEGEI LSEPNNGDGN QNLDLNLGIA PPDTSDGLKI LNSASATMKN 360 QQPNGPGMTS VHPPTWDGVN HHIFPIYEER AIEKRMEVDS FPNWTRQIQG PYGGGANPLP 420 LFSTAASSGF ASSAIMAPSA AAGQLQFPSS TILHRFPPFT NPSNISQFYC RS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in the boundary region of the shoot apical meristem (SAM) and the surrounding sheath. Expressed at low levels in vegetative organs, mostly in the sheaths. In inflorescence tissues, observed in the branch meristem and spikelet meristem regions, as well as in their vasculature and surrounding sheath (PubMed:17144896). Accumulates in incipient rudimentary- and empty-glume primordia (PubMed:22003982). Highly abundant in young developing panicles, but becomes later present at low levels in developing panicles and seeds. Found primarily in the boundary region of glume primordia (PubMed:17144896). {ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in seedlings and developing panicles (PubMed:17144896, PubMed:20017947, PubMed:22003982). Mostly expressed in newly emerging spikelet meristems and, at low levels, in shoots, roots, panicles, mature spikelets and sheaths (PubMed:17144896). {ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G132400.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459872.1 | 0.0 | floral homeotic protein APETALA 2 isoform X3 | ||||
Swissprot | Q8H443 | 1e-108 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A2K2A1L5 | 0.0 | A0A2K2A1L5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s13460.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-101 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G132400.2 |
Entrez Gene | 18100239 |
Publications ? help Back to Top | |||
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