PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G122100.1
Common NamePOPTR_0006s12400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 235aa    MW: 27185.2 Da    PI: 5.6656
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G122100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-141057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W +eEde+l    ++lG + W++Iar  g+ R++k+c+ rw++yl
  Potri.006G122100.1 10 KGSWQEEEDERLTASATLLGERKWDSIARLSGLMRSGKSCRMRWLNYL 57
                        799*******************************************97 PP
2Myb_DNA-binding51.62.1e-1663108148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg  ++eE++++++ + q+G++ W++Iar+++ gRt++++k++w++++
  Potri.006G122100.1  63 RGHISAEEEQIIIQFHGQWGNK-WARIARRLP-GRTDNEIKNYWRTHM 108
                         67779*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.164557IPR017930Myb domain
SuperFamilySSF466895.14E-258104IPR009057Homeodomain-like
SMARTSM007177.5E-9959IPR001005SANT/Myb domain
PfamPF002494.6E-111057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-191164IPR009057Homeodomain-like
CDDcd001679.22E-71257No hitNo description
PROSITE profilePS5129424.98658112IPR017930Myb domain
SMARTSM007173.0E-1562110IPR001005SANT/Myb domain
PfamPF002493.4E-1463107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2465112IPR009057Homeodomain-like
CDDcd001671.69E-1067108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MACQGDKLRK GSWQEEEDER LTASATLLGE RKWDSIARLS GLMRSGKSCR MRWLNYLQPN  60
LKRGHISAEE EQIIIQFHGQ WGNKWARIAR RLPGRTDNEI KNYWRTHMRK EIQTEEEGNF  120
QPKVYSAKPE LLYQNGDSTS AWKYSIRYYN SVDDNIGPAG SSLEHYELPS LTHMNSPYET  180
RQYDWIPKLS NDQSQTEVHG EGNGLDWCFC DPAWNSEDSD ISTLVSLGSL WDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-25811225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G122100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381383.21e-176transcription factor MYB27 isoform X2
RefseqXP_024460171.11e-176transcription factor MYB27 isoform X1
SwissprotQ9SCP12e-55MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A2K2A1011e-174A0A2K2A101_POPTR; Uncharacterized protein
TrEMBLA0A3N7F8B71e-174A0A3N7F8B7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12400.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.18e-58myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]