PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G115700.1
Common NamePOPTR_0006s11680g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 445aa    MW: 49881 Da    PI: 4.8551
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G115700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35161082103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+ l+ +isw + g+sfvv+d+eefa+ vLp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++sF++g+k+
  Potri.006G115700.1  16 FLSKTYDLVDDRMLDPIISWGSIGESFVVWDPEEFARLVLPRNFKHNNFSSFVRQLNTYGFRKIDTDR---------WEFANESFRRGEKH 97 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+ks+
  Potri.006G115700.1  98 LLKNIHRRKST 108
                         ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.04E-3412105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-5712105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.5E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.6E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-171639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-175466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPRPLVCLQE NPVPPFLSKT YDLVDDRMLD PIISWGSIGE SFVVWDPEEF ARLVLPRNFK  60
HNNFSSFVRQ LNTYGFRKID TDRWEFANES FRRGEKHLLK NIHRRKSTQS QQVGSHTGSL  120
TEAGRSGLDS EVERLRKERS VMMQEVIELQ KQQSGTVHDV QSVNQRLQAA EQRQKQMVSF  180
LAKLFQNPAF LARLKQKKQQ GEIGSSRMKR KFVKHQQHQH ALPESSMEGQ IMRYMPDWRN  240
ITLSSVVPDT SPASIDQSPD YLSEGMVGLG LGSEAMPLPE IVAPDEFAIS DELGLGQGFI  300
KTPEQVGEGQ SSMQFEDPKL KGKIDMSPQN EAGLEYFVSF PEDLGMEKSF PELSSPGMER  360
IVKQEDVWSL AFNTSAGMSS SSNVPWDNFF GYDMPELGST GGFSDIWDIG SGQAGGGLSM  420
DKWLADESPV DESDSQAGQP KDDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-221311017125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191199ARLKQKKQQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.136230.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G115700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139790.0KP013979.1 Populus simonii heat shock transcription factor A3 (HsfA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381313.20.0heat stress transcription factor A-3
TrEMBLA0A0N7DK260.0A0A0N7DK26_9ROSI; Heat shock transcription factor A3
STRINGPOPTR_0006s11680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Representative plantOGRP10024911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-102heat shock transcription factor A3