PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G114600.1
Common NamePOPTR_0006s11550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 486aa    MW: 53373.1 Da    PI: 8.5923
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G114600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.31.6e-08126188163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         eke +r rr   NRe+Ar   +R++a +eeL++k++ L+ eN+ Lkke e   k++++l++ +
  Potri.006G114600.1 126 EKEERRLRRILANRESARQTIRRRQALCEELTRKAADLSWENENLKKEKELALKNYQSLETTN 188
                         78999****************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.7E-5124186No hitNo description
PfamPF001701.5E-7126188IPR004827Basic-leucine zipper domain
SMARTSM003382.8E-11126190IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.461128191IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-5130185No hitNo description
CDDcd147026.38E-14131182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MDLDLERCSV SSSGSSSAAD RMELEAAEAL ADLAHLAMRE SSGSEWGSKG KRARKRVRAE  60
SDSVSTYSDL PRQDRAVVDQ QPIHSNVVKP ARQELDADVP KSSPSCATSY PSYGTGRSRL  120
NLTEAEKEER RLRRILANRE SARQTIRRRQ ALCEELTRKA ADLSWENENL KKEKELALKN  180
YQSLETTNKH LKAQMAKQIK AEMEVSPGDL KSALVDIPTT APTNCPLLVY NQHAFSPHCW  240
PSIIQSSNPI QSHYTTENAI VIPSNMPMPT NGTHDSSQLQ QENTVIVSGP RTPLYVVSCP  300
WFFPGPDHGN GLHAQPSFSF KHRQDGISLN NLCCGSSSPK AAAPMENRHS SLSIIVKSET  360
TSSEEVRVIN DLNETPVGFT LYGGGQCEGT HPKEMILTPV PPTSVTPAVA VKNEAGQKSE  420
HAFGANGICT KASQLRCVLP EKNQDPFKFP SKKLVDAASA AEARRRRKEL TKLKNLHGRQ  480
CRLNC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15258ARKRVRA
2463468RRRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G114600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381298.10.0uncharacterized protein LOC18100054 isoform X1
TrEMBLB9MTQ40.0B9MTQ4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s11550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64002834
Representative plantOGRP45691318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.14e-49bZIP family protein