PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G101400.1
Common NamePOPTR_0006s10240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 275aa    MW: 32831 Da    PI: 8.1173
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G101400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.63.9e-2433115186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+ qe+++ + +r e++ ++ ++k++k lWe +sk+m+e+g++rs++qCk+kw+nl +ryk  +++e +     ++++p++++l+
  Potri.006G101400.1  33 QWSIQETKEFLMIRAELDPTFMEKKRNKVLWEVISKNMKEKGYNRSAEQCKCKWKNLVTRYKGYETIEPES---MRHQFPFYNELQ 115
                         7********************************************************************84...34479*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00533092IPR001005SANT/Myb domain
CDDcd122032.53E-223295No hitNo description
PfamPF138372.0E-2033117No hitNo description
PROSITE profilePS500907.483490IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEGLHHHLHH HQQQIQQQHH ISVNVDTSDR FPQWSIQETK EFLMIRAELD PTFMEKKRNK  60
VLWEVISKNM KEKGYNRSAE QCKCKWKNLV TRYKGYETIE PESMRHQFPF YNELQAIFTS  120
RMQRMLWVDA EGAASGSKKK AAQLSSDEEE DNEEISEGEK GSSRKRIKKG KAVGGASCST  180
GNSNSLRETL EDFMKQQMQM EMQWRETFEA RENERRMKEM EWRQIMEGIE NERTTMDRRW  240
REIEEQRRVR EEARAEKRDA LITALLNKLR REDM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G101400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308224.20.0trihelix transcription factor GT-3b
SwissprotQ9SDW02e-70TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A2K1ZZW50.0A0A2K1ZZW5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s10240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.13e-56Trihelix family protein