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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G101400.1 | ||||||||
Common Name | POPTR_0006s10240g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 275aa MW: 32831 Da PI: 8.1173 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 76.6 | 3.9e-24 | 33 | 115 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e++ ++ ++k++k lWe +sk+m+e+g++rs++qCk+kw+nl +ryk +++e + ++++p++++l+ Potri.006G101400.1 33 QWSIQETKEFLMIRAELDPTFMEKKRNKVLWEVISKNMKEKGYNRSAEQCKCKWKNLVTRYKGYETIEPES---MRHQFPFYNELQ 115 7********************************************************************84...34479*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0053 | 30 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.53E-22 | 32 | 95 | No hit | No description |
Pfam | PF13837 | 2.0E-20 | 33 | 117 | No hit | No description |
PROSITE profile | PS50090 | 7.48 | 34 | 90 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MEGLHHHLHH HQQQIQQQHH ISVNVDTSDR FPQWSIQETK EFLMIRAELD PTFMEKKRNK 60 VLWEVISKNM KEKGYNRSAE QCKCKWKNLV TRYKGYETIE PESMRHQFPF YNELQAIFTS 120 RMQRMLWVDA EGAASGSKKK AAQLSSDEEE DNEEISEGEK GSSRKRIKKG KAVGGASCST 180 GNSNSLRETL EDFMKQQMQM EMQWRETFEA RENERRMKEM EWRQIMEGIE NERTTMDRRW 240 REIEEQRRVR EEARAEKRDA LITALLNKLR REDM* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00481 | DAP | Transfer from AT5G01380 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G101400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308224.2 | 0.0 | trihelix transcription factor GT-3b | ||||
Swissprot | Q9SDW0 | 2e-70 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A2K1ZZW5 | 0.0 | A0A2K1ZZW5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s10240.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 | Representative plant | OGRP2262 | 15 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 3e-56 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G101400.1 |
Entrez Gene | 7487325 |