PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.006G101000.1 | ||||||||
Common Name | POPTR_0006s10190g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 258aa MW: 29501.2 Da PI: 8.648 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.8 | 1.8e-31 | 11 | 65 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rF eav+qLGG+++AtPk il++m++ gLt++hvkSHLQkYR+ Potri.006G101000.1 11 KERLRWTQELHDRFEEAVNQLGGPDRATPKGILRAMGISGLTIYHVKSHLQKYRI 65 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.319 | 8 | 68 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-30 | 9 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.38E-17 | 10 | 65 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-25 | 11 | 66 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.9E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.1E-19 | 96 | 140 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MGSSRSDVSN KERLRWTQEL HDRFEEAVNQ LGGPDRATPK GILRAMGISG LTIYHVKSHL 60 QKYRISKFIP ETNRGKYERR NISEMLPNFS ATSGAQLNEA LLMQMEVQKR LSDQLEVQKS 120 LKIKIEAQGR FLERIVEENR NRSASINPIP KHSKSFSPVS QPSLCDESES NAREFETDSE 180 GEKAEIQPEE YLQALKRLRT ENHALPSRYQ LQPLNPDPYN QNMVLQRDAK FSYPSHDANF 240 PWNILATCPS PLVPSFF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-22 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-22 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-22 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-22 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-22 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-22 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-22 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-22 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-22 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-22 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-22 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-22 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.006G101000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308222.2 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 2e-54 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | B9HCX3 | 0.0 | B9HCX3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s10190.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 6e-57 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.006G101000.1 |
Entrez Gene | 7468056 |