PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G086500.1
Common NamePOPTR_0006s08680g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 682aa    MW: 74930.7 Da    PI: 9.5582
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G086500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07590639147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r ++T  E e lv+av++lG+g+W+ +  +     ++Rt  ++k++w ++
  Potri.006G086500.1 590 RRPFTVSEVEALVQAVERLGTGRWRDVKLHAFdkaNHRTYVDLKDKWKTL 639
                         679*************************99999999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.44E-6399469IPR029071Ubiquitin-related domain
PROSITE profilePS5129416.057585644IPR017930Myb domain
SMARTSM007177.7E-8589642IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-10590640IPR009057Homeodomain-like
SuperFamilySSF466891.87E-15591672IPR009057Homeodomain-like
CDDcd116601.76E-17591641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MVFQRRLDYG FDGYQVPVVP RASRSARGRG PIRKKSENNQ KHAFEILASV AGEILQEEET  60
SAPTNTACGK DLCNVKNTIQ QEQVDRGKFL IIEPLLGEPC NEKAFACIPE LQGHWHGNAL  120
NKFLHNQESF NSQGSFASER FDYPETIYVA EKLVVVNSKN AGGSSSCEMN GESSHARKIF  180
KGKVEGLTER KPEAELVKSS SIESGTLLVK DGSEDAMDLD AGSIGHASVE SNVKASLFKD  240
CIGLCPFSRP CADVEVVSRD DDGKSSGCSQ YGAMPKTSRP LSYTETRRMS NLTASRHWRA  300
APISKSGGYF RTDWKTKPPF RNGRTSYSCQ RSQKIFPFKK RKFFDQSTLP TSDGAFHCED  360
IFNSSNKRTN GNDMVSGAKL SATEASSSVK SQHASLDSRD LKLSIKSFKV PELFIEIPAT  420
ATVGSLKRTV MEAITSILGD GLHVGILLQG KKVRDDNKTL LQTGISEDDK HSNLGFMLES  480
RHAKMMSPPH TKNPSNLPFS APGGITRHTT SLMLQEGTSH ASSVPAETNF SSSVGSDLGA  540
VCSLAKASTA DKMSDSRALV PVPAIGRGAL SVVPFNCKSM HPEFGQRRIR RPFTVSEVEA  600
LVQAVERLGT GRWRDVKLHA FDKANHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQEVL  660
DRVLAAHAYW SYRRQLVKAE V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-50574671198Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332341QKIFPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G086500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308162.30.0telomere repeat-binding protein 2
RefseqXP_024460220.10.0telomere repeat-binding protein 2
RefseqXP_024460221.10.0telomere repeat-binding protein 2
TrEMBLA0A2K1ZZ440.0A0A2K1ZZ44_POPTR; Uncharacterized protein
STRINGPOPTR_0006s08680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-122TRF-like 2