PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G077800.2
Common NamePOPTR_0006s07740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 1076aa    MW: 118996 Da    PI: 7.1214
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G077800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62.1e-22135236199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  Potri.006G077800.2 135 FCKTLTASDTSTHGGFSVPRRAAEKIfpplnfSLQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 222
                         99*****************************9777666.49************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++++l+++++r+
  Potri.006G077800.2 223 RDEKQQLLLGIRRA 236
                         5688889****997 PP
2Auxin_resp120.61.2e-39261344183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Potri.006G077800.2 261 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344
                         79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.8E-43124264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-40126250IPR015300DNA-binding pseudobarrel domain
CDDcd100176.81E-19134226No hitNo description
SMARTSM010195.1E-23135237IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956135237IPR003340B3 DNA binding domain
PfamPF023621.5E-20135236IPR003340B3 DNA binding domain
PfamPF065077.3E-35261344IPR010525Auxin response factor
PROSITE profilePS5174523.12710071075IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1076 aa     Download sequence    Send to blast
MKSPATGAGG TATTSTATNG EGAEKKSINP ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ  60
VAASMKKDVD AQIPNYPNLP SKLLCLLHNV TLHADPETDE VYAQMTLQPV SSFDKDALLR  120
SDLALKSNKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLNFSLQP PAQELVARDL  180
HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP  240
TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKAVYSNQI  300
SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS  360
IWEIEPVTAP FFICPPPFFR SKRPRQPGMP DDDSSDFDSL FKRTMPWLGD EFCMKDPQAL  420
PGLSLVQWMN MQQNPSLANS MQPNYMQSLS GSVLQNLPGA DLSRQLGLSS PQMPQPNNVQ  480
FNAQRLPQQA QQLDQLPKLQ SSLIPLGSIM QPQQQMGDIT QQSRQNLMAQ TLPSSQVQAQ  540
LLQPQTLAQT NNILQQQPSI QSHQLLRNLP QTLHHQQQQN QQQHIMGQNQ QQSLMQSQLS  600
DHVNQHMQIS DNHIQLQLLQ KLQQQQQSLL AQQSAMQQAG QLGQLQDSQR QLLDASQSFS  660
RSMAPSQMLE IPQTAPTSLP QPNTIPQQLT KNNNQNNVRF SHPPQQPKLQ QQHTGILPLS  720
EMAGHMGLLP SSMANQLSAA GSSILTAAAG QGQSGITDDV PSCSTSPSTN NCPNIVQPMI  780
NSRAHRSTAM GEDMAQSAAT LLNPSALETV SSNGNLVKDL LQKSEVKPSL NISKNQSPGF  840
FTPQTYLNGV AAQTDYLDTS SSTTSICLSQ NDVHLQQNNN SLSYNPQPML LRDTIHDGEL  900
QADLRNNIPC GTNIDSQLTM PVSSDNLFTK GMVGLGKDFS NNFSSAGMLT SCENSKDPQQ  960
DLSSSMVSQS FGVPEMPFNS INSAINDNSC LNRGAWAPPQ QQFQRMRTYT KVYKRGAVGR  1020
SIDIARYSGY AELKQDLARR FGIEGQFEDQ QRIGWKLVYR DLDDDVLLVG DDPWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1712236545388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G077800.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381166.10.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLU5G6140.0U5G614_POPTR; Auxin response factor
STRINGPOPTR_0006s07740.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19