PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.006G072400.1 | ||||||||
Common Name | POPTR_0006s07170g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 302aa MW: 32898 Da PI: 10.3962 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 1e-30 | 222 | 280 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d ++++tYegeH+h+ Potri.006G072400.1 222 ADEYSWRKYGQKPIKGSPYPRGYYKCSSVrGCPARKHVERAVDDSAMLIVTYEGEHRHS 280 69*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.6E-17 | 175 | 219 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-32 | 209 | 280 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.803 | 216 | 282 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-26 | 219 | 281 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.0E-36 | 221 | 281 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-26 | 223 | 279 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MAVDLVRYSK MEDQMAIQEA ASAGLESMEH LIFAFSNQTR QSHQLDCGEI TNFTVAKFKQ 60 VISMLNRTGH ARFRRGPTSS PSSYPVPVRP VPQEPQKLNL DFVNSNSPPK AESKNDLSLG 120 SQYSKDSLSS GTTTSSFVSS VTADGSVSNG KQGGSSLFGT QARSTGKPPL SSTHRKKCHD 180 HALSARKISS GGSCHCSKRR KSRVKRTIRV PAVSSKIADI PADEYSWRKY GQKPIKGSPY 240 PRGYYKCSSV RGCPARKHVE RAVDDSAMLI VTYEGEHRHS HTPLPGDVTA SAAMRHVFHS 300 T* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 209 | 283 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.10614 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.006G072400.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ377427 | 0.0 | GQ377427.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308998.1 | 0.0 | probable WRKY transcription factor 11 | ||||
Swissprot | Q9SV15 | 1e-108 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | B9HAN3 | 0.0 | B9HAN3_POPTR; WRKY family protein | ||||
STRING | POPTR_0006s07170.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 | Representative plant | OGRP3557 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-101 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.006G072400.1 |
Entrez Gene | 7485489 |