PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G067800.1 | ||||||||
Common Name | POPTR_0006s06700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | YABBY | ||||||||
Protein Properties | Length: 189aa MW: 21234 Da PI: 8.2184 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 206.1 | 1.3e-63 | 9 | 161 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt++ svn+a a q l+ +++++ + + ++++ ++ s+s+ + Potri.006G067800.1 9 PNEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNIWSVNMAAAFQSLSWQDQVQ-------ASNYNSHDYRID-----LGSSSKCN 87 579***********************************************999999732.......223333333333.....22333333 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++ + + v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Potri.006G067800.1 88 NKISMRTPAANIVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 3333344555556666679*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.3E-71 | 9 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.11E-8 | 106 | 154 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.4E-4 | 109 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSSCIDAVPN EQLCYIPCNF CNIVLAVSVP CSSLFDIVTV RCGHCTNIWS VNMAAAFQSL 60 SWQDQVQASN YNSHDYRIDL GSSSKCNNKI SMRTPAANIV TQERVVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNQTK VDDGSEKRLM 180 SRSALQNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G067800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308074.1 | 1e-140 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 2e-86 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | B9HAJ0 | 1e-138 | B9HAJ0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s06700.1 | 1e-139 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 | Representative plant | OGRP2210 | 12 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 8e-89 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G067800.1 |
Entrez Gene | 7485469 |
Publications ? help Back to Top | |||
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