PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.006G066400.1 | ||||||||
Common Name | POPTR_0006s06530g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 27122.5 Da PI: 8.9964 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.7e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd++l+ +v+ +G g+W+t++++ g+ R++k+c++rw +yl Potri.006G066400.1 13 KGLWKPEEDLILKTYVETHGEGNWSTVSKRSGLMRCGKSCRLRWKNYL 60 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.4e-16 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E++ +++ +k+lG++ W++Ia +++ gRt++++k++w+++l Potri.006G066400.1 66 RGGMSQDEEDMIIRMHKLLGNR-WSLIAGRLP-GRTDNDVKNYWNTHL 111 67799*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.711 | 8 | 60 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 9 | 63 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.68E-28 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-10 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.153 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 64 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-14 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.86E-11 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MESKGAKPHE FKKGLWKPEE DLILKTYVET HGEGNWSTVS KRSGLMRCGK SCRLRWKNYL 60 RPNIRRGGMS QDEEDMIIRM HKLLGNRWSL IAGRLPGRTD NDVKNYWNTH LNKRCPSRKR 120 KTIDSKPDQN DNNTKKQYRS KRIRSLSNSQ PTCNTSPIGS TEELEGKNQE KEERSAVISD 180 AWIQQDAQSM NSCIESPMVL HNNATFFFED DPFLTYWDSF DMFESLGCGG DYW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-23 | 10 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 116 | 121 | SRKRKT |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.006G066400.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308975.1 | 1e-176 | transcription factor WER | ||||
Swissprot | Q9LTF7 | 1e-61 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | B9HA93 | 1e-175 | B9HA93_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s06530.1 | 1e-175 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13545 | 20 | 26 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52600.1 | 2e-63 | myb domain protein 82 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.006G066400.1 |
Entrez Gene | 7474681 |