PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G054400.1
Common NamePOPTR_0006s05315g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 67aa    MW: 7901.13 Da    PI: 9.9829
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G054400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-10861147
                        TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmg....kgRtlkqcksrwqky 47
                        + +WT +E+e l+++v+++ ++    Wk I ++       gRt  ++k++w++ 
  Potri.006G054400.1  8 KVPWTVQEEEMLKEGVQKFSSDgkfPWKDILEYGSsvflSGRTTIDLKDKWRNM 61
                        579******************************9999*99************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.755166IPR017930Myb domain
SuperFamilySSF466895.74E-14563IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-14763IPR009057Homeodomain-like
SMARTSM007171.5E-5764IPR001005SANT/Myb domain
PfamPF002498.0E-8861IPR001005SANT/Myb domain
CDDcd116601.14E-14963No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MPRLRRKKVP WTVQEEEMLK EGVQKFSSDG KFPWKDILEY GSSVFLSGRT TIDLKDKWRN  60
MCKDSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G054400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826863e-67AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458671.11e-38uncharacterized protein LOC18099839
TrEMBLA0A3N7F8B34e-38A0A3N7F8B3_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05370.12e-31(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Representative plantOGRP1443713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-09MYB_related family protein