PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G053900.1
Common NamePOPTR_0006s05250g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 702aa    MW: 76502.7 Da    PI: 6.3588
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G053900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07278298526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Potri.006G053900.1 278 PCPDFRK-GACRRGDMCEYAHG 298
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1556137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-1658137IPR020683Ankyrin repeat-containing domain
CDDcd002043.75E-1458136No hitNo description
PfamPF127961.2E-859128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0515989IPR002110Ankyrin repeat
PROSITE profilePS5029717.07759135IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.42294129IPR002110Ankyrin repeat
SMARTSM002487.8E-494126IPR002110Ankyrin repeat
SMARTSM003564.0E-6273299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4278300IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5278298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582278300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4306336IPR000571Zinc finger, CCCH-type
SMARTSM0035633308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MDMNHLTVET EDTFASLLEL AATNDVEGFK RSIERDPSCI DQIGLWYGRQ KGSKQMANEY  60
RTPLMVAATY GSIGVIKVIL SLSDADVNRS CGADKSTALH CAASGGAVNA VDVVKLLLAA  120
GADANVVDAN GHRPIDAIVV PPKFQEARLT LEELLSAEGY VIEHNLRVSM SNANSNSPPL  180
SPSLEDMSLL SGSDSPMKSK LNEAPVHFVS EKKEYPVDPS LPDIKNSIYS TDEFRMYSFK  240
VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF  300
ECWLHPAQYR TRLCKDGTNC ARRVCFFAHT VEELRPLYVS TGSAVPSPRS STSGATAMDF  360
AAAMSLLPGS PSASVMSPQP FSPPMSPSAN GLSHSSMAWL QPNVPALHLP GSNLQSSRLR  420
SSLNARDIQA DYNLLPDFDV QQQQLLSELS SLSQPSLSNN SLNRSGRLKT LAPSNLDVLF  480
SAESLSPQYA DQALASAVFS PSHKSAVLNQ FQQQQSMLSP INTNFSPKNV DHPLLQASFA  540
SGRMSPRNVE PISPMSSRVS MLAQREKQQQ HLHSLGSQEL VSNTAAIVGS PVNSWSKWGS  600
SNGKPDWTVS ADDFGKLRRS NSFELGNGDE PDISWVQSLV KESPTEMKEK STVHVSESIT  660
ASASSSESSN INSHIEPVDL DHAVGSWVEQ LHIDHLVVQQ N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.144360.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G053900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826860.0AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308039.30.0zinc finger CCCH domain-containing protein 30
RefseqXP_024459790.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2K1ZX870.0A0A2K1ZX87_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]