PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G053800.1
Common NamePOPTR_0006s05240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 736aa    MW: 79813.7 Da    PI: 6.4077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G053800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07304324526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Potri.006G053800.1 304 PCPDFRK-GACRRGDMCEYAHG 324
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.55E-1449167IPR020683Ankyrin repeat-containing domain
PfamPF127962.7E-983156IPR020683Ankyrin repeat-containing domain
CDDcd002043.00E-1386165No hitNo description
Gene3DG3DSA:1.25.40.204.6E-1686167IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.65387223IPR020683Ankyrin repeat-containing domain
SMARTSM002480.06787117IPR002110Ankyrin repeat
SMARTSM002483.9E-4122154IPR002110Ankyrin repeat
PROSITE profilePS5008811.781122157IPR002110Ankyrin repeat
SMARTSM003564.0E-6299325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582304326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4304326IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5304324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4332362IPR000571Zinc finger, CCCH-type
SMARTSM0035633334357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MCCRLERLKL AATPTLPTIS SDENLPSNIV MNHLTVETED TFASLLELAA NNDVEGFKQS  60
IERDLSCVDE IGLWYGRKKG SKQMVNEHRT PLMVASTYGS IDVIKVILSL SYVDVNRSCG  120
VEKSTALHCA ASGGAVNAVD VVKLLLAAGA DCNLADANGH RPIDVIVVPP KLQDVRLVLK  180
DLLAADGSHV EQNLRVSIAT ENSNSPPLSP SMENGSPLSG SDSPTKAKLN DAPLASEKKE  240
YPVDPSLPDI KNSIYSTDEF RMYSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY  300
SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTNCARRV CFFAHTVEEL  360
RPLYVSTGSA VPSPRSSTSG ATAMDFAAAM NLLSGSPSAA SIMSPSPFTP PMSPSANGIS  420
HSSVAWPQPN VPALHLPGSN LQSSRLRSSL NARDIPADYN LLPDFDGQQQ QLLSELSSLS  480
QPSLNNNSMN HSGRLKTLTP SNLDDLFSAE SSSPRYTGSS PRYADQALAS AVFSPSHKSA  540
VLNQFQQQQS MLSPINTNFS PKNVDHPLLQ ASFASGRMSP RNVEPISPMS SRVSMLAQRE  600
KQLQQLRSLS SRELGSNAAA IVGSSVNTWS KWGSSNGKPD WTLSTDELGK LCRSNSFEFG  660
NGDGPDLSWV QSLVKESPTE MKDELKMPVS GSIAASASPS ESSNMNSQIE TIDLDTMVGS  720
WVEPLQIDQL VAQQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17582GRKKGSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G053800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826860.0AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308038.20.0zinc finger CCCH domain-containing protein 30
RefseqXP_024459937.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024459938.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLB9H9X30.0B9H9X3_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]