PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G030800.1
Common NamePOPTR_0006s02930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 418aa    MW: 46694.4 Da    PI: 4.768
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G030800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.83e-2181431127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyat.gkrknra..tksgyW 83 
                         l pG+rF Pt+e+l+++yL +kv+g    e++++ik+ +++   ePw++ +    +k++++ +yfF++  kk+ +  kr +r+  t+ g+W
  Potri.006G030800.1   8 LLPGYRFCPTEEQLICYYLYQKVRGGLpSEAATMIKDYNLHGGeEPWEIFNklaGHKEGDNVLYFFTTLGKKTLNcAKRMSRTvgTNGGTW 98 
                         579*********************9983555566*****997549****64233445566688*****9999987688999954588**** PP

                 NAM  84 katgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                         +    d  v+++   ++ ++g+++ + + + r+p+ ++++W++ +y 
  Potri.006G030800.1  99 HGGSVD-VVKARrdnRDIVIGMRRRFLYQNHRRPD-QHCRWILMQYG 143
                         *54433.333334446667*********9888888.8********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-216158IPR003441NAC domain
PROSITE profilePS5100525.7548159IPR003441NAC domain
PfamPF023651.6E-1410142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MQNILSRLLP GYRFCPTEEQ LICYYLYQKV RGGLPSEAAT MIKDYNLHGG EEPWEIFNKL  60
AGHKEGDNVL YFFTTLGKKT LNCAKRMSRT VGTNGGTWHG GSVDVVKARR DNRDIVIGMR  120
RRFLYQNHRR PDQHCRWILM QYGSESISGN VVICKLKISS DHGLKESRKR KSMDYSSEVI  180
QRNINIDAAI NSGPTMAQLT HQDPRQIIQN QEMWPLVGTV SIEDNGGSSA TGDTFYSIQN  240
MGLEAPAIVN IEPALRFQPQ QANFIQEPMI SEHQQMAFAS FSDNQKVLQS EAVFDGYGRS  300
QNIVESFYEH PIISFEPITP LAEESIIIEN EETMGLATFS TEDYFENAAA TVNIEPTTAN  360
ENQQMALASY NGDEGVCPAG DNAITTEDAA PAVSAIPVMD AGLIEYLKNE TNWFANF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G030800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167630.0AC216763.1 Populus trichocarpa clone POP006-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006388809.10.0NAC domain-containing protein 96
TrEMBLA0A2K1ZVZ30.0A0A2K1ZVZ3_POPTR; Uncharacterized protein
STRINGPOPTR_0006s02930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14731213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.26e-16NAC domain containing protein 50