PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G030600.1
Common NamePOPTR_0006s02910g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 433aa    MW: 48391.9 Da    PI: 4.2988
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G030600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.82.6e-2081441127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykv...ePwdLpk..kvkaeekewyfFskrdkkyat..gkrknra..tksg 81 
                         lppGfrF Ptdeel+ +yL++kv+g+ +++ +++ik +++y      P ++ k   +k++++ +yfF+   kk+ +   +r +r+  t+ g
  Potri.006G030600.1   8 LPPGFRFLPTDEELIRYYLHRKVHGRLTPEeADMIKLCNVYGEgarPPCEIFKlaGHKGGDDALYFFTILIKKTLNssTQRMSRTvgTDGG 98 
                         79***********************985551566999999965344899996323556677899****999887752255777744578** PP

                 NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         +W+  g ++ +++  ++e +g+k+ + + ++++p+ ++  W++ ey 
  Potri.006G030600.1  99 TWHGDGVEEVICRLdNTEFKGTKRRFRYQNKQRPD-QHGCWTLLEYG 144
                         *******9988876577779********9777776.8999*****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-226159IPR003441NAC domain
PROSITE profilePS5100526.2048160IPR003441NAC domain
PfamPF023655.5E-159143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MQDILSRLPP GFRFLPTDEE LIRYYLHRKV HGRLTPEEAD MIKLCNVYGE GARPPCEIFK  60
LAGHKGGDDA LYFFTILIKK TLNSSTQRMS RTVGTDGGTW HGDGVEEVIC RLDNTEFKGT  120
KRRFRYQNKQ RPDQHGCWTL LEYGSESISE NVVICKLKIS DHGLKEYSRK RKSMDSSEVI  180
QRNINLDAVI NSGPTMAQSA HDQEPRLLIQ NQEMLPLVGT VSNEDNGGFS ATGDTFYSIQ  240
NMGLEAPAIG NIEPVLPFQP QQENFIQEPT IGEHQQMASE SFSDNQKVVL QSEAVFDGYH  300
ETRQNIAESF YEHPIISFEP IMPLAEESNN IIENQGIMGL ADISTEDYFE NAAANVNFET  360
MTSANENQQM EPASYNGGEG VCPAGDNAVT PENAAPAVSA IPALEDDMLE TLMNDTYWLE  420
NLQAMLREEE DS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G030600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167630.0AC216763.1 Populus trichocarpa clone POP006-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380956.10.0NAC domain-containing protein 78
TrEMBLB9NCY60.0B9NCY6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s02910.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14731213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.23e-15NAC domain containing protein 50