PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G029300.1 | ||||||||
Common Name | POPTR_0097s00210g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 426aa MW: 47565.3 Da PI: 4.6122 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65 | 2.2e-20 | 8 | 143 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykv...ePwdLpk..kvkaeekewyfFskrdkkyatgkrknr.a..tksgy 82 lp GfrF Ptdeel+++yL +kv+g+ +++ +++ik +++y P ++ k +k++++ ++fF++ +kk+++++++ r + t+ g+ Potri.006G029300.1 8 LPTGFRFLPTDEELISYYLLRKVHGRLTPEeADMIKVCNVYGEgarPPCEIFKftGHKGGDDTLFFFTTLSKKTPNSTQRMRrTvgTNGGT 98 699**********************985551566999999965344899996333556677799***********96655552445779** PP NAM 83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 W+ ++ ++ k+e +g+k+ + + ++++p+ ++ W++ ey Potri.006G029300.1 99 WHGDSVEEVTYRLdKTEFKGTKRRFRYQNKQRPD-QNGCWTLLEYG 143 **7766544444347778*********9777776.8999*****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-22 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.286 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-15 | 9 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MQGILSHLPT GFRFLPTDEE LISYYLLRKV HGRLTPEEAD MIKVCNVYGE GARPPCEIFK 60 FTGHKGGDDT LFFFTTLSKK TPNSTQRMRR TVGTNGGTWH GDSVEEVTYR LDKTEFKGTK 120 RRFRYQNKQR PDQNGCWTLL EYGSESISEN VVICKLKISD HGLKESRKRK SMGYSSEVIQ 180 RNINIDAVIN SGPTMAQSAH DQEPRLLIQS QEMLPLVGTV SNEDNGGFSA TGDTFYSIQN 240 MGLEAPAIGN IEPVLPLIQP QRANFIHEPM ISEHQQMAFA SFSDNQKVVL QSEAVFDGYH 300 ESFNEHPIIS FEPIMLRAEE SNVIDNQGIM GLADISTEDY FENAAANVNF ETMTSANENQ 360 QMEPASYNGD EAVSPAGDNA VTPLDAAPAV SAIPVMEAGL IEYWKNETNW FDNFQASILF 420 MIIDK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 170 | SRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G029300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216763 | 0.0 | AC216763.1 Populus trichocarpa clone POP006-F11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006388809.1 | 0.0 | NAC domain-containing protein 96 | ||||
TrEMBL | U7E1F0 | 0.0 | U7E1F0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0097s00210.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14731 | 2 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 1e-09 | TCV-interacting protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G029300.1 |
Entrez Gene | 18110487 |