PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G029200.1 | ||||||||
Common Name | POPTR_0097s00220g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 26578 Da PI: 8.4654 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.9 | 4.9e-20 | 9 | 145 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykve....PwdLpk..kvkaeekewyfFskrdkkyat..gkrknra..tksg 81 pGfrF+Pt e+l+++yL++kv+g+ +++ +++ik ++i++ e Pw++ k +k++++ +yfF++ kk+++ +r +r+ t+ g Potri.006G029200.1 9 SPGFRFDPTGEQLISYYLARKVHGRLTPEeTDMIKVCNILYGEgarpPWEIFKlaGHKGGDDALYFFTTLIKKTRKsgARRMSRTvgTDGG 99 69**********************9955515669999*9986444449**96333556677899****9988887532446677445779* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 +W+ g ++ v+++ ++e +g+k+ + + ++++p+ ++ W++ ey Potri.006G029200.1 100 TWHGDGVEE-VTCRldNREFKGTKRRFRYQNKQRPD-QHGCWTLLEYG 145 *****9955.4444458888*********9777776.8999*****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-20 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.62 | 8 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-15 | 10 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MQDILSRFSP GFRFDPTGEQ LISYYLARKV HGRLTPEETD MIKVCNILYG EGARPPWEIF 60 KLAGHKGGDD ALYFFTTLIK KTRKSGARRM SRTVGTDGGT WHGDGVEEVT CRLDNREFKG 120 TKRRFRYQNK QRPDQHGCWT LLEYGSESIS ENVVICKLKI SEHGLKESRK RKRMDYSSEG 180 VCLAGDNAVT PENAAPAVSA IPAMGHSMRD TLENDPNWFE NHQGLMGTNF SMEY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G029200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149484 | 0.0 | AC149484.1 Populus trichocarpa clone Pop1-69M19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380956.1 | 1e-108 | NAC domain-containing protein 78 | ||||
TrEMBL | U7DZR2 | 1e-177 | U7DZR2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0097s00220.1 | 1e-177 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14731 | 2 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 4e-14 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G029200.1 |
Entrez Gene | 18110488 |