PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G028900.1 | ||||||||
Common Name | POPTR_0097s00260g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 31881.7 Da PI: 6.3623 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.7 | 4.8e-19 | 9 | 145 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykve....PwdLpk..kvkaeekewyfFskrdkkyatgk..rknra..tksg 81 pGfrF+Pt e+l+++yL++kv+g+ +++ +++ik ++i++ e Pw++ k +k +++ +yfF++ kk++++ r +r+ t+ g Potri.006G028900.1 9 SPGFRFDPTGEQLISYYLARKVHGRLTPEeTDMIKVCNILYGEgarpPWEIFKlaGHKVGDDALYFFTTLIKKTRKSGawRMSRTvgTDGG 99 69**********************9955515669999*9986444449*996333555688899****9999887643348888545789* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 +W+ g ++ v+++ ++e +g+k+ + + ++++p+ ++ W + ey Potri.006G028900.1 100 TWHGDGVEE-VTCRldNREFKGTKRRFRYQNNQRPD-QNGCWNLLEYG 145 *****9955.4444458888*********9887777.8999***9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-20 | 7 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.386 | 8 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-14 | 10 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MQDILSRFSP GFRFDPTGEQ LISYYLARKV HGRLTPEETD MIKVCNILYG EGARPPWEIF 60 KLAGHKVGDD ALYFFTTLIK KTRKSGAWRM SRTVGTDGGT WHGDGVEEVT CRLDNREFKG 120 TKRRFRYQNN QRPDQNGCWN LLEYGSESIS DNIVICKLKI SEHGLKESRK RKSMRPLAGT 180 VSNEDNGGCS ATGDTFYSIQ NIGPMTAAYE NQQMEPASYN GGVGVCPAGD NAVTPENAAP 240 AVSAIPVMDA CLTESLNNET SWSANFEALP DFRSLWSPRW IEDHF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 172 | SRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G028900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149484 | 0.0 | AC149484.1 Populus trichocarpa clone Pop1-69M19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380956.1 | 1e-114 | NAC domain-containing protein 78 | ||||
TrEMBL | U7DZR8 | 0.0 | U7DZR8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0097s00260.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14731 | 2 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 8e-15 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G028900.1 |
Entrez Gene | 18110493 |