PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G028700.1 | ||||||||
Common Name | POPTR_0097s00280g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 344aa MW: 38678.6 Da PI: 6.5761 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.2 | 1.2e-21 | 8 | 142 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvka...eekewyfFskrdkkyatgk.rknra..tksgyW 83 lppGf F+Pt e+l+ +yL++kv+g+ +e++++ik+ ++y + ePw+L +kv++ +++ +y F++ dkk+a+++ r +r+ t+ g W Potri.006G028700.1 8 LPPGFIFRPTGEQLIGHYLHHKVHGRLtVEADDMIKDYNLYGAeEPWELFNKVTGhkeGDDVLYCFTTLDKKTAKSTkRMRRTvgTNGGKW 98 79**********************9985777888*******9868****75444411144577*********9986615555445779*** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 + ++ +++ ++e +g+k+ + + +++++ ++ W++ ey Potri.006G028700.1 99 HGDSLEEVIYRLdNREFKGTKRRFRYQ-NKQRRDKHGCWTLLEYG 142 ***999999987567779*******97.677777999******95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-22 | 5 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.456 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-12 | 9 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MQKIHTLLPP GFIFRPTGEQ LIGHYLHHKV HGRLTVEADD MIKDYNLYGA EEPWELFNKV 60 TGHKEGDDVL YCFTTLDKKT AKSTKRMRRT VGTNGGKWHG DSLEEVIYRL DNREFKGTKR 120 RFRYQNKQRR DKHGCWTLLE YGSQSISDNI VICELKMSDH GLKESRKRKS MWPLPSGDMG 180 LEAPAIVNIE PALRLQPQQA NFIQEPMISE HQQVAFASFS DNHQKVVLQS EAVFDGYGRS 240 QNIVESFYEH PKISFEPMKA EESKIIKNQE ITGLADFPTQ DSFENAAAII NSEPMTSAYE 300 NQQMEPASYN GGGGVCPAGD NAVTPENAAP AVSAIPAMGH SIY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 169 | SRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G028700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216763 | 1e-162 | AC216763.1 Populus trichocarpa clone POP006-F11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380956.1 | 1e-129 | NAC domain-containing protein 78 | ||||
TrEMBL | U7E2G7 | 0.0 | U7E2G7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0097s00280.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14731 | 2 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 6e-13 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G028700.1 |
Entrez Gene | 18110495 |