PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.006G028300.1 | ||||||||
Common Name | POPTR_0302s00220g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 403aa MW: 44883.1 Da PI: 4.3578 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.2 | 1.9e-20 | 8 | 144 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv...ePwdLpk..kvkaeekewyfFskrdkkyat..gkrknra..tksg 81 lppGfrF Ptdeel+ +yL++kv+g+ e+++vik +++y P ++ k +k++++ +yfF+ kk+ + +r +r+ t+ g Potri.006G028300.1 8 LPPGFRFLPTDEELIRYYLHRKVHGRLtPEEADVIKLCNLYGEgarPPCEIFKlaGHKGGDDALYFFTILIKKTLNssTQRMSRTvgTDGG 98 79***********************984445577**99*9975344899996323556677899****999887752255777744578** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 +W+ g ++ +++ ++e +g+k+ + + ++++p+ ++ W++ ey Potri.006G028300.1 99 TWHGDGVEEVICRLdNTEFKGTKRRFRYQNKQRPD-QHGCWTLLEYG 144 *******9988876577779********9777776.8999*****95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-22 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.348 | 8 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-15 | 9 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 403 aa Download sequence Send to blast |
MQDILSRLPP GFRFLPTDEE LIRYYLHRKV HGRLTPEEAD VIKLCNLYGE GARPPCEIFK 60 LAGHKGGDDA LYFFTILIKK TLNSSTQRMS RTVGTDGGTW HGDGVEEVIC RLDNTEFKGT 120 KRRFRYQNKQ RPDQHGCWTL LEYGSESISE NVVICKLKIS DHGLKESRKR KSMDSSEVIQ 180 RTVNIDAVIN SGPTMAQSAH DQEPRLLIQN QEMLPLVGTV SNEDNGGFSA TGDTFYSIQN 240 MGLEAPAIGN IEPVLPFQPQ QANFIQEPTI GEHQQMASES FNEHPIISFE PIMLLSEESN 300 IIENQGIMGL ADISTEDYFE NAAANVNFET MTSANENQQM EPASYNGGER VCPAGDNAVT 360 PENAAPAVSA IPALEDDMLE TLMNDTYWLE NLQAMPREEE DS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 166 | 171 | SRKRKS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.006G028300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC149484 | 0.0 | AC149484.1 Populus trichocarpa clone Pop1-69M19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380956.1 | 0.0 | NAC domain-containing protein 78 | ||||
TrEMBL | U7DVR4 | 0.0 | U7DVR4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0302s00220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14731 | 2 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10480.2 | 2e-15 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.006G028300.1 |
Entrez Gene | 18109880 |