PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G005300.1
Common NamePOPTR_0006s00710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 296aa    MW: 32572.6 Da    PI: 7.0235
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G005300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.64.2e-15188267886
            trihelix   8 laLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         laLi + ++m  +l+ +g++  + W+++s+ m   g++ ++k Ckekwen+nk +kk   +  k+  e+ +  pyf++l+
  Potri.006G005300.1 188 LALISFIQNMTGHLQvTGSKGTNIWDAISDGMCNMGYNSTAKNCKEKWENINKHFKKSVGSVVKNPFENITVNPYFHELD 267
                         79*************557777899************************************99999888888999***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122033.70E-14182245No hitNo description
PfamPF138371.1E-12188268No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDLLAADDRQ IRNPNDFPLH LIPFPPTGNF DISTSAAAVV GSSDVDSLLP QKLRPIRGNG  60
RVPSGSGEDG REKLWGFVSG EASDVAVNGG GGLGLCSCDG NADDSSVGAG ESVGRKRKRR  120
SKRKIEKFLE SLVMKVMEKQ EEMHKQLVEM IESRERETMI REEAWKQQEM ERMERDNEAR  180
AQETSRNLAL ISFIQNMTGH LQVTGSKGTN IWDAISDGMC NMGYNSTAKN CKEKWENINK  240
HFKKSVGSVV KNPFENITVN PYFHELDVLY NNGFVNLGNG STNTGKQANC TLGKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119RKRKRR
2114122RKRKRRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G005300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101291e-113AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002364.11e-123PREDICTED: uncharacterized protein LOC105109364
TrEMBLA0A2K1ZUS31e-123A0A2K1ZUS3_POPTR; Uncharacterized protein
STRINGPOPTR_0006s00710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3937722
Representative plantOGRP1130157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-21Trihelix family protein