PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G000800.4 | ||||||||
Common Name | POPTR_0006s00290g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 308aa MW: 33656.8 Da PI: 6.8924 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108 | 5.2e-34 | 21 | 75 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Potri.006G000800.4 21 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 75 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.485 | 18 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-32 | 20 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.53E-18 | 20 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-25 | 21 | 76 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 23 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-23 | 107 | 153 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MTMDPINGGN NLNNNPNLAS KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG 60 LTIYHVKSHL QKYRLAKYLP DSSSDGKKAD KKETGDMISN LDGSSGMQIT EALKLQMEVQ 120 KRLHEQLEVQ RQLQLRIEAQ GKYLKKIIEE QQRLSGVLED VPGSGVAAPV SGDNCPESDK 180 TDPATPAPTS ESPLQDKAAK ERAPAKSLSI DESFSSQPEP LTPDSRCNAG SPAESPRGER 240 SMKKQRVSIG VTYGKQEMVL THQILESSLN SYPRPHSAFL GREQFDPSSG LSMGIEDQME 300 KVSGSDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-24 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G000800.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU224847 | 0.0 | CU224847.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006380859.2 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_024459395.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_024459396.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_024459397.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Refseq | XP_024459399.1 | 0.0 | myb family transcription factor PHL7 isoform X3 | ||||
Refseq | XP_024459400.1 | 0.0 | myb family transcription factor PHL7 isoform X3 | ||||
Swissprot | Q9SJW0 | 1e-135 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2K1ZUI1 | 0.0 | A0A2K1ZUI1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s00290.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-111 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G000800.4 |
Entrez Gene | 7458457 |