PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G000800.2
Common NamePOPTR_0006s00290g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 333aa    MW: 36499.8 Da    PI: 5.6626
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G000800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.85.9e-3449103155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Potri.006G000800.2  49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.48546106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-3248104IPR009057Homeodomain-like
SuperFamilySSF466898.6E-1848103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2549104IPR006447Myb domain, plants
PfamPF002491.4E-951102IPR001005SANT/Myb domain
PfamPF143791.8E-23132178IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MYQLESVPSS SSVHKNSLVN DQYLDCDDMT MDPINGGNNL NNNPNLASKQ RLRWTHELHE  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDADKKETG  120
DMISNLDGSS GMQITEALKL QMEVQKRLHE QLEVQRQLQL RIEAQGKYLK KIIEEQQRLS  180
GVLEDVPGSG VAAPVSGDNC PESDKTDPAT PAPTSESPLQ DKAAKERAPA KSLSIDESFS  240
SQPEPLTPDS RCNAGSPAES PRGERSMKKQ RVSIGVTYGK QEMVLTHQIL ESSLNSYPRP  300
HSAFLGREQF DPSSGLSMGI EDQMEKVSGS DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G000800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2248470.0CU224847.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380858.20.0myb family transcription factor PHL7 isoform X2
SwissprotQ9SJW01e-130PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2K1ZUI40.0A0A2K1ZUI4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s00290.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-115G2-like family protein