PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G236700.1 | ||||||||
Common Name | POPTR_0005s25800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 945aa MW: 103454 Da PI: 5.0774 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.6 | 1.3e-24 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++Lk+gD+v+F Potri.005G236700.1 147 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFI- 234 99*********************999*****954444.4.38************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+v+v+r+ Potri.005G236700.1 235 -RDEKSQLMVGVRRA 248 .4577778*****97 PP | |||||||
2 | Auxin_resp | 111 | 1.2e-36 | 273 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++s+F+++YnPra++s+Fv+++ k++ka+ ++vsvGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ Potri.005G236700.1 273 AAHATANRSPFTIFYNPRACPSDFVIPLIKFRKAVFgTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 356 79********************************988*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.28E-46 | 134 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-42 | 140 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.17E-23 | 146 | 247 | No hit | No description |
SMART | SM01019 | 1.8E-25 | 147 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-22 | 147 | 248 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.253 | 147 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-31 | 273 | 356 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.0E-10 | 822 | 916 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.601 | 829 | 913 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.83E-8 | 842 | 908 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 945 aa Download sequence Send to blast |
MGSVEEKIKT GGLANGAQTN LLEEMKLLKE FQDQSGIRKA INSELWYACA GPLVSLPQVG 60 SLVYYFPQGH SEQVAVSTRR SATSQIPNYP NLPSQLLCQV HNVTLHADKD TDEIYAQMSL 120 QPVNTEKDVF PIPDFGLRPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYTM 180 QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSLFV GSKRLKAGDS VLFIRDEKSQ 240 LMVGVRRANR QQTTLPSSVL SADSMHIGVL AAAAHATANR SPFTIFYNPR ACPSDFVIPL 300 IKFRKAVFGT QVSVGMRFGM MFETEESGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD 360 EPGCSDKQNR VSSWEIETPE SLFIFPSLTS GLKRPLQSGF LGDSEWGSLV KKPLSWLPGS 420 GNANLPYASM SNICSEQLIN MLMKPHPINY PGICGAALPE VSAAKVASLD VKNMQATINQ 480 MPQLNQSGVT SVENQNYSQI CLDQSDAIIS SSLKINVAGK SFSSSEVENQ ASVGVGERKL 540 KAETEHLPDQ LSQLTSTGEC IVQKPSSCPM TQQNATNHLA FQNQNQGHSQ LQTNLWPAQA 600 FPESSLLNSQ QILSPLADAT APNCSLPFLD ADEWISHPMS LAGMYRSGPL SMFGSQDTSV 660 VFPEAINPSL PFMNQDVWDH QMSNSTFLSQ ANQLISSTQQ EPCTLNSGAV KDLSDESNDQ 720 SGIYGSLNFD ASNGGGSVVD PSVSSAILDE FCTLKDADLQ NASDCLVGNL SSSQDVQSQI 780 TSASLADSQA FSRQDFPDNS GGTSSSNVDF DNSNMLQNSS WQQVAPRVRT YTKVQKTGSV 840 GRSIDVSSFK NYEELCSAIE CMFGLDGLLN NPKRSGWKLV YVDYENDVLL IGDDPWEEFV 900 GCVRCIRILS PSEVQQMSEE GMKLLNSANI QGTNAPITEG SHAR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 381 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11883 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In early embryo and during organ development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant with a lower expression in leaves. Detected in embryo axis, provascular tissues, procambium and some differentiated vascular regions of mature organs. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G236700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024457113.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A2K2ALJ1 | 0.0 | A0A2K2ALJ1_POPTR; Auxin response factor | ||||
STRING | POPTR_0005s25800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8991 | 32 | 41 | Representative plant | OGRP8260 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G236700.1 |
Entrez Gene | 7477660 |